No Accumulation of Transposable Elements in Asexual Arthropods

No evidence that sex and transposable elements drive genome size variation in evening primroses

(2015) J. Arvid Ågren et al.   EVOLUTION

Allele Sharing and Evidence for Sexuality in a Mitochondrial Clade of Bdelloid Rotifers

(2015) Ana Signorovitch et al.   GENETICS

Drosophila Muller F Elements Maintain a Distinct Set of Genomic Properties Over 40 Million Years of Evolution

(2015) Wilson Leung et al.   G3-Genes Genomes Genetics

Allele Sharing and Evidence for Sexuality in a Mitochondrial Clade of Bdelloid Rotifers

(2015) Ana Signorovitch et al.   GENETICS

Tedna: a transposable element de novo assembler

(2014) Matthias Zytnicki et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Supergenes and Complex Phenotypes

(2014) Tanja Schwander et al.   CURRENT BIOLOGY

Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads

(2014) Rei Kajitani et al.   GENOME RESEARCH

Genetic causes of transitions from sexual reproduction to asexuality in plants and animals

(2014) M. Neiman et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Recurrent Loss of Sex Is Associated with Accumulation of Deleterious Mutations in Oenothera

(2014) Jesse D. Hollister et al.   MOLECULAR BIOLOGY AND EVOLUTION

MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping

(2014) Wan-Ping Lee et al.   PLoS One

Estimation of the Spontaneous Mutation Rate per Nucleotide Site in a Drosophila melanogaster Full-Sib Family

(2013) Peter D. Keightley et al.   GENETICS

Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga

(2013) Jean-François Flot et al.   NATURE

The Capsella rubella genome and the genomic consequences of rapid mating system evolution

(2013) Tanja Slotte et al.   NATURE GENETICS

Y-chromosome evolution: emerging insights into processes of Y-chromosome degeneration

(2013) Doris Bachtrog   NATURE REVIEWS GENETICS

Population-genomic insights into the evolutionary origin and fate of obligately asexual Daphnia pulex

(2013) A. E. Tucker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic parasites or symbionts? Modeling the effects of environmental pressure on transposition activity in asexual populations

(2013) Michał Startek et al.   THEORETICAL POPULATION BIOLOGY

Transposon proliferation in an asexual parasitoid

(2012) KEN KRAAIJEVELD et al.   MOLECULAR ECOLOGY

Sequencing of Pooled DNA Samples (Pool-Seq) Uncovers Complex Dynamics of Transposable Element Insertions in Drosophila melanogaster

(2012) Robert Kofler et al.   PLoS Genetics

The struggle for life of the genome's selfish architects

(2011) Aurélie Hua-Van et al.   Biology Direct

Discovery of Highly Divergent Repeat Landscapes in Snake Genomes Using High-Throughput Sequencing

(2011) Todd A. Castoe et al.   Genome Biology and Evolution

Genome Size and Transposable Element Content as Determined by High-Throughput Sequencing in Maize and Zea luxurians

(2011) Maud I. Tenaillon et al.   Genome Biology and Evolution

Deleterious Mutation Accumulation in Asexual Timema Stick Insects

(2011) Lee Henry et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Ecoresponsive Genome of Daphnia pulex

(2011) J. K. Colbourne et al.   SCIENCE

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

LTR retroelements in the genome of Daphnia pulex

(2010) Mina Rho et al.   BMC GENOMICS

Arthropod colonization of land – Linking molecules and fossils in oribatid mites (Acari, Oribatida)

(2010) Ina Schaefer et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

DNA transposon dynamics in populations of Daphnia pulex with and without sex

(2010) S. Schaack et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

DNA transposons and the role of recombination in mutation accumulation in Daphnia pulex

(2010) Sarah Schaack et al.   GENOME BIOLOGY

Exploring Repetitive DNA Landscapes Using REPCLASS, a Tool That Automates the Classification of Transposable Elements in Eukaryotic Genomes

(2009) Cédric Feschotte et al.   Genome Biology and Evolution

ABySS: A parallel assembler for short read sequence data

(2009) J. T. Simpson et al.   GENOME RESEARCH

Transposable Elements and Factors Influencing their Success in Eukaryotes

(2009) E. J. Pritham   JOURNAL OF HEREDITY

Accelerated Mutation Accumulation in Asexual Lineages of a Freshwater Snail

(2009) M. Neiman et al.   MOLECULAR BIOLOGY AND EVOLUTION

Signs of sex: what we know and how we know it

(2009) Andrew M. Schurko et al.   TRENDS IN ECOLOGY & EVOLUTION

Identification of repeat structure in large genomes using repeat probability clouds

(2008) Wanjun Gu et al.   ANALYTICAL BIOCHEMISTRY

Constraints on the evolution of asexual reproduction

(2008) Jan Engelstädter   BIOESSAYS

Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita

(2008) Pierre Abad et al.   NATURE BIOTECHNOLOGY

Genomic degradation of a young Y chromosome in Drosophila miranda

(2008) Doris Bachtrog et al.   GENOME BIOLOGY