Accurate genome-wide predictions of spatio-temporal gene expression during embryonic development

FlyBase at 25: looking to the future

(2016) L. Sian Gramates et al.   NUCLEIC ACIDS RESEARCH

Comparing mRNA levels using in situ hybridization of a target gene and co-stain

(2014) Zeba Wunderlich et al.   METHODS

Diversity and dynamics of the Drosophila transcriptome

(2014) James B. Brown et al.   NATURE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Predicting Spatial and Temporal Gene Expression Using an Integrative Model of Transcription Factor Occupancy and Chromatin State

(2012) Bartek Wilczynski et al.   PLoS Computational Biology

Trachealess (Trh) regulates all tracheal genes during Drosophila embryogenesis

(2011) SeYeon Chung et al.   DEVELOPMENTAL BIOLOGY

Global Prediction of Tissue-Specific Gene Expression and Context-Dependent Gene Networks in Caenorhabditis elegans

(2009) Maria D. Chikina et al.   PLoS Computational Biology