Imputation of canine genotype array data using 365 whole-genome sequences improves power of genome-wide association studies

Multivariate genome-wide association analysis identifies novel and relevant variants associated with anterior cruciate ligament rupture risk in the dog model

(2018) Lauren A. Baker et al.   BMC GENETICS

Genome-wide association analysis in dogs implicates 99 loci as risk variants for anterior cruciate ligament rupture

(2017) Lauren A. Baker et al.   PLoS One

A novel iterative mixed model to remap three complex orthopedic traits in dogs

(2017) Meng Huang et al.   PLoS One

FGF4retrogene on CFA12 is responsible for chondrodystrophy and intervertebral disc disease in dogs

(2017) Emily A. Brown et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Analysis of large versus small dogs reveals three genes on the canine X chromosome associated with body weight, muscling and back fat thickness

(2017) Jocelyn Plassais et al.   PLoS Genetics

Genotype Imputation with Millions of Reference Samples

(2016) Brian L. Browning et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Evaluation of the genetic basis of primary hypoadrenocorticism in Standard Poodles using SNP array genotyping and whole-genome sequencing

(2016) Steven G. Friedenberg et al.   MAMMALIAN GENOME

Genotype imputation in the domestic dog

(2016) S. G. Friedenberg et al.   MAMMALIAN GENOME

Complex disease and phenotype mapping in the domestic dog

(2016) Jessica J. Hayward et al.   Nature Communications

A Pedigree-Based Map of Recombination in the Domestic Dog Genome

(2016) C. L. Campbell et al.   G3-Genes Genomes Genetics

Epigenome-wide association study (EWAS) of BMI, BMI change and waist circumference in African American adults identifies multiple replicated loci

(2015) Ellen W. Demerath et al.   HUMAN MOLECULAR GENETICS

A global reference for human genetic variation

(2015) Richard A. Gibbs et al.   NATURE

Genetic variance estimation with imputed variants finds negligible missing heritability for human height and body mass index

(2015) Jian Yang et al.   NATURE GENETICS

Genome-Wide Association Studies in Dogs and Humans Identify ADAMTS20 as a Risk Variant for Cleft Lip and Palate

(2015) Zena T. Wolf et al.   PLoS Genetics

Genetic Mapping of Novel Loci Affecting Canine Blood Phenotypes

(2015) Michelle E. White et al.   PLoS One

Genome-wide association study identifies genomic regions of association for cruciate ligament rupture in Newfoundland dogs

(2014) A. E. G. Baird et al.   ANIMAL GENETICS

Genetic basis of cranial cruciate ligament rupture (CCLR) in dogs

(2014) Arabella Elizabeth Gardiner Baird et al.   CONNECTIVE TISSUE RESEARCH

Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle

(2014) Hans D Daetwyler et al.   NATURE GENETICS

An Improved Canine Genome and a Comprehensive Catalogue of Coding Genes and Non-Coding Transcripts

(2014) Marc P. Hoeppner et al.   PLoS One

Haplotype Estimation Using Sequencing Reads

(2013) Olivier Delaneau et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Derived variants at six genes explain nearly half of size reduction in dog breeds

(2013) M. Rimbault et al.   GENOME RESEARCH

Genome-Wide Analysis in German Shepherd Dogs Reveals Association of a Locus on CFA 27 with Atopic Dermatitis

(2013) Katarina Tengvall et al.   PLoS Genetics

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Identification of ANAPC13 gene polymorphisms associated with body measurement traits in Bos taurus

(2012) B.J. Jiang et al.   GENETICS AND MOLECULAR RESEARCH

Improving accuracy of genomic predictions within and between dairy cattle breeds with imputed high-density single nucleotide polymorphism panels

(2012) M. Erbe et al.   JOURNAL OF DAIRY SCIENCE

The insulin-like growth factor 1 receptor (IGF1R) contributes to reduced size in dogs

(2012) Barbara C. Hoopes et al.   MAMMALIAN GENOME

An integrated map of genetic variation from 1,092 human genomes

(2012)   NATURE

Fast and accurate genotype imputation in genome-wide association studies through pre-phasing

(2012) Bryan Howie et al.   NATURE GENETICS

Genome-wide efficient mixed-model analysis for association studies

(2012) Xiang Zhou et al.   NATURE GENETICS

Genetic Control of Canine Leishmaniasis: Genome-Wide Association Study and Genomic Selection Analysis

(2012) Javier Quilez et al.   PLoS One

Insulin-like growth factor-II: new roles for an old actor

(2012) Stefano Cianfarani   Frontiers in Endocrinology

Genome-Wide Association Study in Dachshund: Identification of a Major Locus Affecting Intervertebral Disc Calcification

(2011) M. S. Mogensen et al.   JOURNAL OF HEREDITY

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Identification of Genomic Regions Associated with Phenotypic Variation between Dog Breeds using Selection Mapping

(2011) Amaury Vaysse et al.   PLoS Genetics

Leading the way: canine models of genomics and disease

(2010) A. L. Shearin et al.   Disease Models & Mechanisms

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Associations between novel single nucleotide polymorphisms in the Bos taurus growth hormone gene and performance traits in Holstein-Friesian dairy cattle

(2010) M.P. Mullen et al.   JOURNAL OF DAIRY SCIENCE

Hundreds of variants clustered in genomic loci and biological pathways affect human height

(2010) Hana Lango Allen et al.   NATURE

A Simple Genetic Architecture Underlies Morphological Variation in Dogs

(2010) Adam R. Boyko et al.   PLOS BIOLOGY

A Unified Approach to Genotype Imputation and Haplotype-Phase Inference for Large Data Sets of Trios and Unrelated Individuals

(2009) Brian L. Browning et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Genotype Imputation

(2009) Yun Li et al.   Annual Review of Genomics and Human Genetics

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

An Expressed Fgf4 Retrogene Is Associated with Breed-Defining Chondrodysplasia in Domestic Dogs

(2009) H. G. Parker et al.   SCIENCE

Coat Variation in the Domestic Dog Is Governed by Variants in Three Genes

(2009) E. Cadieu et al.   SCIENCE

Inherited defects in pedigree dogs. Part 1: Disorders related to breed standards

(2009) Lucy Asher et al.   VETERINARY JOURNAL

A Flexible and Accurate Genotype Imputation Method for the Next Generation of Genome-Wide Association Studies

(2009) Bryan N. Howie et al.   PLoS Genetics

The LIM protein LIMD1 influences osteoblast differentiation and function

(2008) Hilary F. Luderer et al.   EXPERIMENTAL CELL RESEARCH

Single-Nucleotide-Polymorphism-Based Association Mapping of Dog Stereotypes

(2008) Paul Jones et al.   GENETICS

Genome-wide association analysis identifies 20 loci that influence adult height

(2008) Michael N Weedon et al.   NATURE GENETICS

Newly identified loci that influence lipid concentrations and risk of coronary artery disease

(2008) Cristen J Willer et al.   NATURE GENETICS

Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans

(2008) Sekar Kathiresan et al.   NATURE GENETICS

Leader of the pack: gene mapping in dogs and other model organisms

(2008) Elinor K. Karlsson et al.   NATURE REVIEWS GENETICS

A Mutation in Hairless Dogs Implicates FOXI3 in Ectodermal Development

(2008) Cord Drögemüller et al.   SCIENCE