Comparative transcriptomic analysis of a wing-dimorphic stonefly reveals candidate wing loss genes

Testing for seasonality in alpine streams: How does altitude affect freshwater insect life cycles?

(2018) Graham A. McCulloch et al.   FRESHWATER BIOLOGY

Insect wing loss is tightly linked to the treeline: evidence from a diverse stonefly assemblage

(2018) Graham A. McCulloch et al.   ECOGRAPHY

Genotyping-by-sequencing supports a genetic basis for wing reduction in an alpine New Zealand stonefly

(2018) Andrew J. Veale et al.   Scientific Reports

Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper

(2017) Jaime Huerta-Cepas et al.   MOLECULAR BIOLOGY AND EVOLUTION

BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics

(2017) Robert M Waterhouse et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Tissue-Mapped Axolotl De Novo Transcriptome Enables Identification of Limb Regeneration Factors

(2017) Donald M. Bryant et al.   Cell Reports

Does wing reduction influence the relationship between altitude and insect body size? A case study using New Zealand's diverse stonefly fauna

(2017) Graham A. McCulloch et al.   Ecology and Evolution

Ecological Trade-offs between Migration and Reproduction Are Mediated by the Nutrition-Sensitive Insulin-Signaling Pathway

(2016) Xinda Lin et al.   International Journal of Biological Sciences

Juvenile Hormone and the endocrine regulation of wing polymorphism in insects: new insights from circadian and functional-genomic studies inGrylluscrickets

(2016) Anthony J. Zera   PHYSIOLOGICAL ENTOMOLOGY

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Genome-wide SNPs reveal fine-scale differentiation among wingless alpine stonefly populations and introgression between winged and wingless forms

(2015) Nicolas Dussex et al.   EVOLUTION

CpG methylated ribosomal RNA genes in relation to wing polymorphism in the rice pest Sogatella furcifera

(2015) Shi-Ke Liang et al.   JOURNAL OF ASIA-PACIFIC ENTOMOLOGY

Evolutionary history of a dispersal-associated locus across sympatric and allopatric divergent populations of a wing-polymorphic beetle across Atlantic Europe

(2015) Steven M. Van Belleghem et al.   MOLECULAR ECOLOGY

Two insulin receptors determine alternative wing morphs in planthoppers

(2015) Hai-Jun Xu et al.   NATURE

Origin and diversification of wings: Insights from a neopteran insect

(2015) Victor Medved et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

CpG methylated ribosomal RNA genes in relation to wing polymorphism in the rice pest Sogatella furcifera

(2015) Shi-Ke Liang et al.   JOURNAL OF ASIA-PACIFIC ENTOMOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Phylogenomics resolves the timing and pattern of insect evolution

(2014) B. Misof et al.   SCIENCE

On the optimal trimming of high-throughput mRNA sequence data

(2014) Matthew D. MacManes   Frontiers in Genetics

Differential DNA methylation between two wing phenotypes adults ofSogatella furcifera

(2013) Xiaosui Zhou et al.   GENESIS

Juvenile hormone titer and wing-morph differentiation in the vetch aphid Megoura crassicauda

(2013) Asano Ishikawa et al.   JOURNAL OF INSECT PHYSIOLOGY

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Speciation: Don't Fly and Diversify?

(2012) Alfried P. Vogler et al.   CURRENT BIOLOGY

De novo Transcriptome Assembly and SNP Discovery in the Wing Polymorphic Salt Marsh Beetle Pogonus chalceus (Coleoptera, Carabidae)

(2012) Steven M. Van Belleghem et al.   PLoS One

Advances in Insect Phylogeny at the Dawn of the Postgenomic Era

(2011) Michelle D. Trautwein et al.   Annual Review of Entomology

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

INHERITANCE OF WING DIMORPHISM IN PTEROSTICHUS ANTHRACINUS ILL

(2010) CARL H. LINDROTH   HEREDITAS

Wing development genes of the pea aphid and differential gene expression between winged and unwinged morphs

(2010) J. A. Brisson et al.   INSECT MOLECULAR BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Do insects lose flight before they lose their wings? Population genetic structure in subalpine stoneflies

(2009) GRAHAM A. McCULLOCH et al.   MOLECULAR ECOLOGY

Wing-length determination in two wing-dimorphic Calathus species (Coleoptera: Carabidae)1,2

(2008) BEREND AUKEMA   HEREDITAS

The genome of the model beetle and pest Tribolium castaneum

(2008) Stephen Richards et al.   NATURE