Within species expressed genetic variability and gene expression response to different temperatures in the rotifer Brachionus calyciflorus sensu stricto

Genome-wide characterization and expression of the elongation of very long chain fatty acid (Elovl) genes and fatty acid profiles in the alga (Tetraselmis suecica) fed marine rotifer Brachionus koreanus

(2019) Min-Chul Lee et al.   Comparative Biochemistry and Physiology D-Genomics & Proteomics

Genome-wide identification of 31 cytochrome P450 ( CYP ) genes in the freshwater rotifer Brachionus calyciflorus and analysis of their benzo[α]pyrene-induced expression patterns

(2018) Jeonghoon Han et al.   Comparative Biochemistry and Physiology D-Genomics & Proteomics

Analysis of digital gene expression profiling in the gonad of male silkworms (Bombyx mori) under fluoride stress

(2018) Wenchao Tang et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Desaturases and elongases involved in polyunsaturated fatty acid biosynthesis in aquatic invertebrates: a comprehensive review

(2018) Óscar Monroig et al.   FISHERIES SCIENCE

Genomic signatures of local adaptation to the degree of environmental predictability in rotifers

(2018) Lluis Franch-Gras et al.   Scientific Reports

Differential response to heat stress among evolutionary lineages of an aquatic invertebrate species complex

(2018) Sofia Paraskevopoulou et al.   Biology Letters

Effects of temperature on growth and fatty acid synthesis in the cyclopoid copepod Paracyclopina nana

(2017) Seung-Hwi Lee et al.   FISHERIES SCIENCE

Temporal patterns and processes of genetic differentiation of the Brachionus calyciflorus (Rotifera) complex in a subtropical shallow lake

(2017) Ye Zhang et al.   HYDROBIOLOGIA

Transcriptome response of the Pacific oyster, Crassostrea gigas susceptible to thermal stress: A comparison with the response of tolerant oyster

(2017) Bo-Mi Kim et al.   Molecular & Cellular Toxicology

Contrasting gene expression programs correspond with predator-induced phenotypic plasticity within and across generations in Daphnia

(2017) Nicole R. Hales et al.   MOLECULAR ECOLOGY

Adaptation in response to environmental unpredictability

(2017) Lluis Franch-Gras et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Ecological differentiation in cryptic rotifer species: what we can learn from the Brachionus plicatilis complex

(2016) Carmen Gabaldón et al.   HYDROBIOLOGIA

Integrative Taxonomy Recognizes Evolutionary Units Despite Widespread Mitonuclear Discordance: Evidence from a Rotifer Cryptic Species Complex

(2016) Spiros Papakostas et al.   SYSTEMATIC BIOLOGY

Association between heat stress and oxidative stress in poultry; mitochondrial dysfunction and dietary interventions with phytochemicals

(2016) Abdollah Akbarian et al.   Journal of Animal Science and Biotechnology

Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors

(2016) Luisa Orsini et al.   Scientific Data

Contrasting transcriptome response to thermal stress in two key zooplankton species, Calanus finmarchicus and C. glacialis

(2015) I Smolina et al.   MARINE ECOLOGY PROGRESS SERIES

Contrasting transcriptome response to thermal stress in two key zooplankton species, Calanus finmarchicus and C. glacialis

(2015) I Smolina et al.   MARINE ECOLOGY PROGRESS SERIES

Getting the most out of RNA-seq data analysis

(2015) Tsung Fei Khang et al.   PeerJ

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Functional genomics of acclimation and adaptation in response to thermal stress in Daphnia

(2014) Lev Y Yampolsky et al.   BMC GENOMICS

Molecular phylogenies as a tool to understand diversity in rotifers

(2014) Diego Fontaneto   INTERNATIONAL REVIEW OF HYDROBIOLOGY

Ribosomal stress activates eEF2K–eEF2 pathway causing translation elongation inhibition and recruitment of Terminal Oligopyrimidine (TOP) mRNAs on polysomes

(2014) Angelo Gismondi et al.   NUCLEIC ACIDS RESEARCH

PredictSNP: Robust and Accurate Consensus Classifier for Prediction of Disease-Related Mutations

(2014) Jaroslav Bendl et al.   PLoS Computational Biology

EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments

(2013) Ning Leng et al.   BIOINFORMATICS

Comparative transcriptome analysis of obligately asexual and cyclically sexual rotifers reveals genes with putative functions in sexual reproduction, dormancy, and asexual egg production

(2013) Sara J Hanson et al.   BMC GENOMICS

RNA-seq analysis reveals extensive transcriptional plasticity to temperature stress in a freshwater fish species

(2013) Steve Smith et al.   BMC GENOMICS

The nascent polypeptide-associated complex is a key regulator of proteostasis

(2013) Janine Kirstein-Miles et al.   EMBO JOURNAL

Temperature variation makes ectotherms more sensitive to climate change

(2013) Krijn P. Paaijmans et al.   GLOBAL CHANGE BIOLOGY

An improved method for achieving high-quality RNA for copepod transcriptomic studies

(2013) Huan Zhang et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Investigating the molecular basis of local adaptation to thermal stress: population differences in gene expression across the transcriptome of the copepod Tigriopus californicus

(2012) Sean D Schoville et al.   BMC EVOLUTIONARY BIOLOGY

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Three heat shock proteins are essential for rotifer thermotolerance

(2011) Hilary A. Smith et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

The effect of temperature on life history parameters and cost of reproduction in the rotiferBrachionus calyciflorus

(2011) Paul Kauler et al.   JOURNAL OF FRESHWATER ECOLOGY

Patterns and processes in the genetic differentiation of the Brachionus calyciflorus complex, a passively dispersing freshwater zooplankton

(2011) Xian-ling Xiang et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Limited potential for adaptation to climate change in a broadly distributed marine crustacean

(2011) M. W. Kelly et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Local adaptation in rotifer populations

(2010) Sergi Campillo et al.   EVOLUTIONARY ECOLOGY

Why Does Insect RNA Look Degraded?

(2010) Eva C. Winnebeck et al.   JOURNAL OF INSECT SCIENCE

Rapid temporal succession identified by COI of the rotifer Brachionus calyciflorus Pallas in Xihai Pond, Beijing, China, in relation to ecological traits

(2010) L. Li et al.   JOURNAL OF PLANKTON RESEARCH

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Spatial patterns of genetic differentiation in Brachionus calyciflorus species complex collected from East China in summer

(2009) Xian-Ling Xiang et al.   HYDROBIOLOGIA

Selection on life-history traits and genetic population divergence in rotifers

(2009) S. CAMPILLO et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Divergent selection and heterogeneous genomic divergence

(2009) PATRIK NOSIL et al.   MOLECULAR ECOLOGY

Phylogenetic and Functional Assessment of Orthologs Inference Projects and Methods

(2009) Adrian M. Altenhoff et al.   PLoS Computational Biology

Overexpression of a mitochondrial ATP synthase small subunit gene (AtMtATP6) confers tolerance to several abiotic stresses in Saccharomyces cerevisiae and Arabidopsis thaliana

(2008) Xinxin Zhang et al.   BIOTECHNOLOGY LETTERS

“REVERSE ECOLOGY” AND THE POWER OF POPULATION GENOMICS

(2008) Yong Fuga Li et al.   EVOLUTION

Cryptic ecological diversification of a planktonic estuarine copepod, Acartia tonsa

(2008) GANG CHEN et al.   MOLECULAR ECOLOGY