ncRNA-eQTL: a database to systematically evaluate the effects of SNPs on non-coding RNA expression across cancer types

Risk SNP-Mediated Promoter-Enhancer Switching Drives Prostate Cancer through lncRNA PCAT19

(2018) Junjie Tony Hua et al.   CELL

Cancer-associated rs6983267 SNP and its accompanying long noncoding RNACCAT2induce myeloid malignancies via unique SNP-specific RNA mutations

(2018) Maitri Y. Shah et al.   GENOME RESEARCH

Uncovering association networks through an eQTL analysis involving human miRNAs and lincRNAs

(2018) Paulo R. Branco et al.   Scientific Reports

A Peptide Encoded by a Putative lncRNA HOXB-AS3 Suppresses Colon Cancer Growth

(2017) Jin-Zhou Huang et al.   MOLECULAR CELL

Association analysis identifies 65 new breast cancer risk loci

(2017) Kyriaki Michailidou et al.   NATURE

Genetic effects on gene expression across human tissues

(2017) François Aguet et al.   NATURE

MSDD: a manually curated database of experimentally supported associations among miRNAs, SNPs and human diseases

(2017) Ming Yue et al.   NUCLEIC ACIDS RESEARCH

PancanQTL: systematic identification of cis-eQTLs and trans-eQTLs in 33 cancer types

(2017) Jing Gong et al.   NUCLEIC ACIDS RESEARCH

lncRNASNP2: an updated database of functional SNPs and mutations in human and mouse lncRNAs

(2017) Ya-Ru Miao et al.   NUCLEIC ACIDS RESEARCH

The lncRNA HULC functions as an oncogene by targeting ATG7 and ITGB1 in epithelial ovarian carcinoma

(2017) Shuo Chen et al.   Cell Death & Disease

Integration of summary data from GWAS and eQTL studies predicts complex trait gene targets

(2016) Zhihong Zhu et al.   NATURE GENETICS

LincSNP 2.0: an updated database for linking disease-associated SNPs to human long non-coding RNAs and their TFBSs

(2016) Shangwei Ning et al.   NUCLEIC ACIDS RESEARCH

The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog)

(2016) Jacqueline MacArthur et al.   NUCLEIC ACIDS RESEARCH

The Expression of CCAT2, a Novel Long Noncoding RNA Transcript, and rs6983267 Single-Nucleotide Polymorphism Genotypes in Colorectal Cancers

(2016) Yuta Kasagi et al.   ONCOLOGY

High Expression of lncRNA-PCNA-AS1 in Human Gastric Cancer and its Clinical Significances

(2015) Yuan Dang et al.   Clinical Laboratory

Exploring Diallelic Genetic Markers: TheHardyWeinbergPackage

(2015) Jan Graffelman   Journal of Statistical Software

A global reference for human genetic variation

(2015) Richard A. Gibbs et al.   NATURE

The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans

(2015) et al.   SCIENCE

Putative cis-regulatory drivers in colorectal cancer

(2014) Halit Ongen et al.   NATURE

Genetic and Epigenetic Regulation of Human lincRNA Gene Expression

(2013) Konstantin Popadin et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Systematic identification of trans eQTLs as putative drivers of known disease associations

(2013) Harm-Jan Westra et al.   NATURE GENETICS

Matrix eQTL: ultra fast eQTL analysis via large matrix operations

(2012) A. A. Shabalin   BIOINFORMATICS

Comprehensive molecular portraits of human breast tumours

(2012) Daniel C. Koboldt et al.   NATURE

Mapping cis- and trans-regulatory effects across multiple tissues in twins

(2012) Elin Grundberg et al.   NATURE GENETICS

Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses

(2012) Oliver Stegle et al.   Nature Protocols

Genome-wide association study identifies five loci associated with susceptibility to pancreatic cancer in Chinese populations

(2011) Chen Wu et al.   NATURE GENETICS

Candidate Causal Regulatory Effects by Integration of Expression QTLs with Complex Trait Genetic Associations

(2010) Alexandra C. Nica et al.   PLoS Genetics

Potential etiologic and functional implications of genome-wide association loci for human diseases and traits

(2009) L. A. Hindorff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Flexible and Accurate Genotype Imputation Method for the Next Generation of Genome-Wide Association Studies

(2009) Bryan N. Howie et al.   PLoS Genetics

SNAP: a web-based tool for identification and annotation of proxy SNPs using HapMap

(2008) A. D. Johnson et al.   BIOINFORMATICS

Accurate Discovery of Expression Quantitative Trait Loci Under Confounding From Spurious and Genuine Regulatory Hotspots

(2008) H. M. Kang et al.   GENETICS