4.7 Article

LAZY3 plays a pivotal role in positive root gravitropism in Lotus japonicus

Journal

JOURNAL OF EXPERIMENTAL BOTANY
Volume 71, Issue 1, Pages 168-177

Publisher

OXFORD UNIV PRESS
DOI: 10.1093/jxb/erz429

Keywords

Gene expression; LAZY family; Lotus japonicus; polar auxin transport; polar localization; root gravitropism

Categories

Funding

  1. National Natural Science Foundation of China [31100217, 31570242]

Ask authors/readers for more resources

LAZY1 family genes play important roles in both shoot and root gravitropism in plants. Here we report a Lotus japonicus mutant that displays negative gravitropic response in primary and lateral roots. Map-based cloning identified the mutant gene LAZY3 as a functional ortholog of the LAZY1 gene. Mutation of the LAZY3 gene reduced rootward polar auxin transport (PAT) in the primary root, which was also insensitive to the PAT inhibitor N-1-naphthylphthalamic acid. Moreover, immunolocalization of enhanced green fluorescent protein-tagged LAZY3 in L. japonicus exhibited polar localization of LAZY3 on the plasma membrane in root stele cells. We therefore suggest that the polar localization of LAZY3 in stele cells might be required for PAT in L. japonicus root. LAZY3 transcripts displayed asymmetric distribution at the root tip within hours of gravistimulation, while overexpression of LAZY3 under a constitutive promoter in lazy3 plants rescued the gravitropic response in roots. These data indicate that root gravitropism depends on the presence of LAZY3 but not on its asymmetric expression in root tips. Expression of other LAZY genes in a lazy3 background did not rescue the growth direction of roots, suggesting that the LAZY3 gene plays a distinct role in root gravitropism in L. japonicus.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.7
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Review Plant Sciences

Hemoglobins in the legume-Rhizobium symbiosis

Estibaliz Larrainzar, Irene Villar, Maria Carmen Rubio, Carmen Perez-Rontome, Raul Huertas, Shusei Sato, Jeong-Hwan Mun, Manuel Becana

NEW PHYTOLOGIST (2020)

Article Genetics & Heredity

Insights into the evolution of symbiosis gene copy number and distribution from a chromosome-scale Lotus japonicus Gifu genome sequence

Nadia Kamal, Terry Mun, Dugald Reid, Jie-Shun Lin, Turgut Yigit Akyol, Niels Sandal, Torben Asp, Hideki Hirakawa, Jens Stougaard, Klaus F. X. Mayer, Shusei Sato, Stig Uggerhoj Andersen

DNA RESEARCH (2020)

Article Microbiology

Massive rhizobial genomic variation associated with partner quality in Lotus-Mesorhizobium symbiosis

Masaru Bamba, Seishiro Aoki, Tadashi Kajita, Hiroaki Setoguchi, Yasuyuki Watano, Shusei Sato, Takashi Tsuchimatsu

FEMS MICROBIOLOGY ECOLOGY (2020)

Article Plant Sciences

Lotus japonicus Nuclear Factor YA1, a nodule emergence stage-specific regulator of auxin signalling

Arina Shrestha, Sihui Zhong, Jasmine Therrien, Terry Huebert, Shusei Sato, Terry Mun, Stig U. Andersen, Jens Stougaard, Agnes Lepage, Andreas Niebel, Loretta Ross, Krzysztof Szczyglowski

Summary: Legume root nodule organogenesis is initiated by the stimulation of root cells and involves the regulation of specific gene families to promote cellular differentiation and auxin signaling. The emergence of nodules is dependent on a regulatory cascade involving NF-YA1, STY genes, and downstream targets YUCCA1 and YUCCA11. These genes are important regulators of auxin signaling during the specific stage of nodule emergence in Lotus japonicus and Medicago truncatula.

NEW PHYTOLOGIST (2021)

Article Horticulture

Efficient mutation induction using heavy-ion beam irradiation and simple genomic screening with random primers in taro (Colocasia esculenta L. Schott)

Tomoki Matsuyama, Manabu Watanabe, Yuri Murota, Nanako Nakata, Hisashi Kitamura, Takashi Shimokawa, Toshikazu Ebisuzaki, Satoshi Wada, Shusei Sato, Satoshi Tabata

SCIENTIA HORTICULTURAE (2020)

Article Plant Sciences

Intragenic complementation at the Lotus japonicus CELLULOSE SYNTHASE-LIKE D1 locus rescues root hair defects

Bogumil J. Karas, Loretta Ross, Mara Novero, Lisa Amyot, Arina Shrestha, Sayaka Inada, Michiharu Nakano, Tatsuya Sakai, Dario Bonetta, Sushei Sato, Jeremy D. Murray, Paola Bonfante, Krzysztof Szczyglowski

Summary: Root hair cells are crucial for nutrient uptake and defense in plants, with the gene CSLD1 playing a role in root hair development in the legume species Lotus japonicus. Multiple mutant alleles of Ljcsld1 result in varying root hair phenotypes, with certain mutations affecting root nodule symbiosis. Intragenic complementation is observed between alleles with mutations in different CSLD1 domains, suggesting modular function of CSLD1 during root hair development.

PLANT PHYSIOLOGY (2021)

Article Biochemistry & Molecular Biology

A Dual-Color Tyr-FISH Method for Visualizing Genes/Markers on Plant Chromosomes to Create Integrated Genetic and Cytogenetic Maps

Natalya Kudryavtseva, Aleksey Ermolaev, Gennady Karlov, Ilya Kirov, Masayoshi Shigyo, Shusei Sato, Ludmila Khrustaleva

Summary: The study aimed to improve the reliability of genome assembly at the chromosome level and develop a simpler and more reliable method for in situ mapping of short unique DNA sequences on plant chromosomes. By adjusting key steps, the short DNA sequence was successfully detected and a new dual-color Tyr-FISH visualization protocol was developed.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2021)

Article Ecology

Evolution of rhizobial symbiosis islands through insertion sequence-mediated deletion and duplication

Haruka Arashida, Haruka Odake, Masayuki Sugawara, Ryota Noda, Kaori Kakizaki, Satoshi Ohkubo, Hisayuki Mitsui, Shusei Sato, Kiwamu Minamisawa

Summary: Symbiosis between organisms influences evolution through adaptive changes in genome architectures. Interactions between soybeans and Bradyrhizobium involve IS-mediated duplications and deletions on symbiosis islands, with host plants selecting mutualistic variants from the pool of rhizobial populations. Homologous recombination between direct IS copies provides a natural mechanism for generating deletions and duplications in symbiosis islands.

ISME JOURNAL (2022)

Article Genetics & Heredity

Insights from the first genome assembly of Onion (Allium cepa)

Richard Finkers, Martijn van Kaauwen, Kai Ament, Karin Burger-Meijer, Raymond Egging, Henk Huits, Linda Kodde, Laurens Kroon, Masayoshi Shigyo, Shusei Sato, Ben Vosman, Wilbert van Workum, Olga Scholten

Summary: This study presents the de novo assembly and annotation of the onion genome, resulting in a high-quality sequence for future research on onion genetics. The genome assembly revealed insights into the repetitive sequences and gene distribution, as well as the synteny with garlic, showing both collinearity and major rearrangements between the two species.

G3-GENES GENOMES GENETICS (2021)

Article Microbiology

In Vivo Evidence of Single 13C and 15N Isotope-Labeled Methanotrophic Nitrogen-Fixing Bacterial Cells in Rice Roots

Shintaro Hara, Naohisa Wada, Sliver Sung-Yun Hsiao, Meng Zhang, Zhihua Bao, Yoshiyuki Iizuka, Der-Chuen Lee, Shusei Sato, Sen-Lin Tang, Kiwamu Minamisawa

Summary: This study demonstrates that type II methanotrophs in the root tissues of paddy rice perform methane oxidation and nitrogen fixation simultaneously at the single-cell level. The findings provide direct evidence of the activities of methanotrophs in root tissues, suggesting that they may provide fixed nitrogen to root systems or depend on different microenvironmental niches.
Article Plant Sciences

FER and LecRK show haplotype-dependent cold-responsiveness and mediate freezing tolerance in Lotus japonicus

Yusdar Mustamin, Turgut Yigit Akyol, Max Gordon, Andi Madihah Manggabarani, Yoshiko Isomura, Yasuko Kawamura, Masaru Bamba, Cranos Williams, Stig Uggerhj Andersen, Shusei Sato

Summary: This research found that winter survival was the direct target of selection during colonization of Japan by Lotus japonicus. Two candidate genes, FERONIA-receptor like kinase (LjFER) and a S-receptor-like kinase gene (LjLecRK), were identified to be required for non-acclimated freezing tolerance and exhibited haplotype-dependent cold-responsive expression. The study suggests that incorporating a conserved growth regulator gene, FER, and a receptor-like kinase gene, LecRK, into the cold-responsive genes contributed to freezing tolerance and local climate adaptation in L. japonicus, providing insights into the genetic mechanisms of perennial herb evolution.

PLANT PHYSIOLOGY (2023)

Article Genetics & Heredity

Development of a genome-wide marker design workflow for onions and its application in target amplicon sequencing-based genotyping

Daisuke Sekine, Satoshi Oku, Tsukasa Nunome, Hideki Hirakawa, Mai Tsujimura, Toru Terachi, Atsushi Toyoda, Masayoshi Shigyo, Shusei Sato, Hikaru Tsukazaki

Summary: This study presents a genome-wide marker design workflow for onions, which is applied in a high-throughput genotyping method using target amplicon sequencing. The efficiency of the method is evaluated by genotyping F-2 populations. The results show that our marker design workflow and target amplicon sequencing are useful for genome-wide genotyping of onions. However, there are missing or sparse marker regions in the resulting genetic linkage map, which need further improvement.

DNA RESEARCH (2022)

Article Biotechnology & Applied Microbiology

Lotus Accessions Possess Multiple Checkpoints Triggered by Different Type III Secretion System Effectors of the Wide-Host-Range Symbiont Bradyrhizobium elkanii USDA61

Shohei Kusakabe, Nahoko Higasitani, Takakazu Kaneko, Michiko Yasuda, Hiroki Miwa, Shin Okazaki, Kazuhiko Saeki, Atsushi Higashitani, Shusei Sato

MICROBES AND ENVIRONMENTS (2020)

Article Plant Sciences

SEN1 gene from Lotus japonicus MG20 improves nitrogen fixation and plant growth

Yuki Nishida, Reona Hiraoka, Satomi Kawano, Norio Suganuma, Shusei Sato, Satoshi Watanabe, Toyoaki Anai, Susumu Arima, Akiyoshi Tominaga, Akihiro Suzuki

SOIL SCIENCE AND PLANT NUTRITION (2020)

No Data Available