Small protein–protein interfaces rich in electrostatic are often linked to regulatory function

The Subtle Trade-Off between Evolutionary and Energetic Constraints in Protein–Protein Interactions

(2019) Filippo Marchetti et al.   Journal of Physical Chemistry Letters

What method to use for protein–protein docking?

(2019) Kathryn A Porter et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Exploring the potential of 3D Zernike descriptors and SVM for protein–protein interface prediction

(2018) Sebastian Daberdaku et al.   BMC BIOINFORMATICS

Protein-protein interface hot spots prediction based on a hybrid feature selection strategy

(2018) Yanhua Qiao et al.   BMC BIOINFORMATICS

A new probability method to understand protein-protein interface formation mechanism at amino acid level

(2018) Yongxiao Yang et al.   JOURNAL OF THEORETICAL BIOLOGY

Computational Feasibility of an Exhaustive Search of Side-Chain Conformations in Protein-Protein Docking

(2018) Taras Dauzhenka et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Improved inference of intermolecular contacts through protein–protein interaction prediction using coevolutionary analysis

(2018) Miguel Correa Marrero et al.   BIOINFORMATICS

PPICurator: A Tool for Extracting Comprehensive Protein-Protein Interaction Information

(2018) Mansheng Li et al.   PROTEOMICS

iFrag: A Protein–Protein Interface Prediction Server Based on Sequence Fragments

(2017) Javier Garcia-Garcia et al.   JOURNAL OF MOLECULAR BIOLOGY

SpotOn: High Accuracy Identification of Protein-Protein Interface Hot-Spots

(2017) Irina S. Moreira et al.   Scientific Reports

Different protein-protein interface patterns predicted by different machine learning methods

(2017) Wei Wang et al.   Scientific Reports

A novel index of protein-protein interface propensity improves interface residue recognition

(2016) Wentao Dai et al.   BMC Systems Biology

Protein–protein interface prediction based on hexagon structure similarity

(2016) Fei Guo et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Discrete structural features among interface residue-level classes

(2015) Gopichandran Sowmya et al.   BMC BIOINFORMATICS

Linking structural features of protein complexes and biological function

(2015) Gopichandran Sowmya et al.   PROTEIN SCIENCE

A hybrid method for protein-protein interface prediction

(2015) Howook Hwang et al.   PROTEIN SCIENCE

Transient protein-protein interface prediction: datasets, features, algorithms, and the RAD-T predictor

(2014) Calem J Bendell et al.   BMC BIOINFORMATICS

Benchmarking protein-protein interface predictions: Why you should care about protein size

(2014) Juliette Martin   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Oligomerisation status and evolutionary conservation of interfaces of protein structural domain superfamilies

(2013) Anshul Sukhwal et al.   Molecular BioSystems

Protein docking prediction using predicted protein-protein interface

(2012) Bin Li et al.   BMC BIOINFORMATICS

Predicting protein-protein interface residues using local surface structural similarity

(2012) Rafael A Jordan et al.   BMC BIOINFORMATICS

HomPPI: a class of sequence homology based protein-protein interface prediction methods

(2011) Li C Xue et al.   BMC BIOINFORMATICS

Conserved residue clusters at protein-protein interfaces and their use in binding site identification

(2010) Mainak Guharoy et al.   BMC BIOINFORMATICS

Studies of protein-protein interfaces: A statistical analysis of the hydrophobic effect

(2010) Chung-Jung Tsai et al.   PROTEIN SCIENCE

Structural features for homodimer folding mechanism

(2009) Sajitha Lulu et al.   JOURNAL OF MOLECULAR GRAPHICS & MODELLING

Energy based approach for understanding the recognition mechanism in protein–protein complexes

(2009) M. Michael Gromiha et al.   Molecular BioSystems

Prediction of Protein-Protein Interface Sequence Diversity Using Flexible Backbone Computational Protein Design

(2008) Elisabeth L. Humphris et al.   STRUCTURE