SpotOn: High Accuracy Identification of Protein-Protein Interface Hot-Spots

Identifying sigma70 promoters with novel pseudo nucleotide composition

(2017) Hao Lin et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Protein function in precision medicine: deep understanding with machine learning

(2016) Burkhard Rost et al.   FEBS LETTERS

Identifying RNA 5-methylcytosine sites via pseudo nucleotide compositions

(2016) Pengmian Feng et al.   Molecular BioSystems

Modulation of Protein–Protein Interactions for the Development of Novel Therapeutics

(2016) Ioanna Petta et al.   MOLECULAR THERAPY

iOri-Human: identify human origin of replication by incorporating dinucleotide physicochemical properties into pseudo nucleotide composition

(2016) Chang-Jian Zhang et al.   Oncotarget

Identification of Secretory Proteins inMycobacterium tuberculosisUsing Pseudo Amino Acid Composition

(2016) Huan Yang et al.   Biomed Research International

RAMPred: identifying the N1-methyladenosine sites in eukaryotic transcriptomes

(2016) Wei Chen et al.   Scientific Reports

Prediction of phosphothreonine sites in human proteins by fusing different features

(2016) Ya-Wei Zhao et al.   Scientific Reports

PAI: Predicting adenosine to inosine editing sites by using pseudo nucleotide compositions

(2016) Wei Chen et al.   Scientific Reports

protr/ProtrWeb: R package and web server for generating various numerical representation schemes of protein sequences

(2015) Nan Xiao et al.   BIOINFORMATICS

The Role of Water Occlusion for the Definition of a Protein Binding Hot-Spot

(2015) Irina Moreira   CURRENT TOPICS IN MEDICINAL CHEMISTRY

Computational prediction of protein interfaces: A review of data driven methods

(2015) Li C. Xue et al.   FEBS LETTERS

Solvent Accessible Surface Area-Based Hot-Spot Detection Methods for Protein–Protein and Protein–Nucleic Acid Interfaces

(2015) Cristian R. Munteanu et al.   Journal of Chemical Information and Modeling

NGL Viewer: a web application for molecular visualization

(2015) Alexander S. Rose et al.   NUCLEIC ACIDS RESEARCH

Predicting the Effect of Mutations on Protein-Protein Binding Interactions through Structure-Based Interface Profiles

(2015) Jeffrey R. Brender et al.   PLoS Computational Biology

Building Predictive Models inRUsing thecaretPackage

(2015) Max Kuhn   Journal of Statistical Software

Identification of mitochondrial proteins of malaria parasite using analysis of variance

(2014) Hui Ding et al.   AMINO ACIDS

PseAAC-General: Fast Building Various Modes of General Form of Chou’s Pseudo-Amino Acid Composition for Large-Scale Protein Datasets

(2014) Pufeng Du et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

iCTX-Type: A Sequence-Based Predictor for Identifying the Types of Conotoxins in Targeting Ion Channels

(2014) Hui Ding et al.   Biomed Research International

Computational Alanine Scanning Mutagenesis—An Improved Methodological Approach for Protein–DNA Complexes

(2013) Rui M. Ramos et al.   Journal of Chemical Theory and Computation

AcalPred: A Sequence-Based Tool for Discriminating between Acidic and Alkaline Enzymes

(2013) Hao Lin et al.   PLoS One

Solvent-accessible surface area: How well can be applied to hot-spot detection?

(2013) João M. Martins et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

SKEMPI: a Structural Kinetic and Energetic database of Mutant Protein Interactions and its use in empirical models

(2012) Iain H. Moal et al.   BIOINFORMATICS

The prediction of protein structural class using averaged chemical shifts

(2012) Hao Lin et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

CPORT: A Consensus Interface Predictor and Its Performance in Prediction-Driven Docking with HADDOCK

(2011) Sjoerd J. de Vries et al.   PLoS One

Identify Golgi Protein Types with Modified Mahalanobis Discriminant Algorithm and Pseudo Amino Acid Composition

(2011) Hui Ding et al.   PROTEIN AND PEPTIDE LETTERS

KFC2: A knowledge-based hot spot prediction method based on interface solvation, atomic density, and plasticity features

(2011) Xiaolei Zhu et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Predicting ion channels and their types by the dipeptide mode of pseudo amino acid composition

(2010) Hao Lin et al.   JOURNAL OF THEORETICAL BIOLOGY

Some remarks on protein attribute prediction and pseudo amino acid composition

(2010) Kuo-Chen Chou   JOURNAL OF THEORETICAL BIOLOGY

Eukaryotic and prokaryotic promoter prediction using hybrid approach

(2010) Hao Lin et al.   THEORY IN BIOSCIENCES

Proteochemometric modeling as a tool to design selective compounds and for extrapolating to novel targets

(2010) Gerard J. P. van Westen et al.   MedChemComm

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Prediction of Cell Wall Lytic Enzymes Using Chous Amphiphilic Pseudo Amino Acid Composition

(2009) Hui Ding et al.   PROTEIN AND PEPTIDE LETTERS

Simulation of biological evolution and the NFL theorems

(2008) Ronald Meester   BIOLOGY & PHILOSOPHY

The modified Mahalanobis Discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition

(2008) Hao Lin   JOURNAL OF THEORETICAL BIOLOGY

Predicting Subcellular Localization of Mycobacterial Proteins by Using Chous Pseudo Amino Acid Composition

(2008) Hao Lin et al.   PROTEIN AND PEPTIDE LETTERS