Metagenomic and chemical characterization of soil cobalamin production

Coordinated gene expression between Trichodesmium and its microbiome over day–night cycles in the North Pacific Subtropical Gyre

(2018) Kyle R Frischkorn et al.   ISME Journal

DNA-based determination of soil microbial biomass in alkaline and carbonaceous soils of semi-arid climate

(2018) Mikhail Semenov et al.   JOURNAL OF ARID ENVIRONMENTS

Accumulation of NO2 -cobalamin in nutrient-stressed ammonia-oxidizing archaea and in the oxygen deficient zone of the Eastern Tropical North Pacific

(2018) Katherine R. Heal et al.   Environmental Microbiology Reports

Functional Genomics and Phylogenetic Evidence Suggest Genus-Wide Cobalamin Production by the Globally Distributed Marine Nitrogen Fixer Trichodesmium

(2018) Nathan G. Walworth et al.   Frontiers in Microbiology

Nitrosopumilus maritimus gen. nov., sp. nov., Nitrosopumilus cobalaminigenes sp. nov., Nitrosopumilus oxyclinae sp. nov., and Nitrosopumilus ureiphilus sp. nov., four marine ammonia-oxidizing archaea of the phylum Thaumarchaeota

(2017) Wei Qin et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Microbial production of vitamin B12: a review and future perspectives

(2017) Huan Fang et al.   Microbial Cell Factories

Elucidation of roles for vitamin B12in regulation of folate, ubiquinone, and methionine metabolism

(2017) Margaret F. Romine et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cyanobacteria and Eukaryotic Algae Use Different Chemical Variants of Vitamin B12

(2016) Katherine Emma Helliwell et al.   CURRENT BIOLOGY

Beyond the Black Queen Hypothesis

(2016) Alix Mas et al.   ISME Journal

Two distinct pools of B12analogs reveal community interdependencies in the ocean

(2016) Katherine R. Heal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Decoupling function and taxonomy in the global ocean microbiome

(2016) S. Louca et al.   SCIENCE

Cobalamin's (Vitamin B 12 ) Surprising Function as a Photoreceptor

(2016) Zhuo Cheng et al.   TRENDS IN BIOCHEMICAL SCIENCES

Relic DNA is abundant in soil and obscures estimates of soil microbial diversity

(2016) Paul Carini et al.   Nature Microbiology

MetAnnotate: function-specific taxonomic profiling and comparison of metagenomes

(2015) Pavel Petrenko et al.   BMC BIOLOGY

Vitamin B12 catalysed reactions

(2015) Maciej Giedyk et al.   CHEMICAL SOCIETY REVIEWS

Exploring mutualistic interactions between microalgae and bacteria in the omics age

(2015) Matthew B Cooper et al.   CURRENT OPINION IN PLANT BIOLOGY

Ecology and exploration of the rare biosphere

(2015) Michael D. J. Lynch et al.   NATURE REVIEWS MICROBIOLOGY

The Pfam protein families database: towards a more sustainable future

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Anaerobic biosynthesis of the lower ligand of vitamin B12

(2015) Amrita B. Hazra et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phytoplankton–bacterial interactions mediate micronutrient colimitation at the coastal Antarctic sea ice edge

(2015) Erin M. Bertrand et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Human Gut Microbes Use Multiple Transporters to Distinguish Vitamin B12 Analogs and Compete in the Gut

(2014) Patrick H. Degnan et al.   Cell Host & Microbe

Aquatic metagenomes implicate Thaumarchaeota in global cobalamin production

(2014) Andrew C Doxey et al.   ISME Journal

Cryptic carbon and sulfur cycling between surface ocean plankton

(2014) Bryndan P. Durham et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Determination of four forms of vitamin B12and other B vitamins in seawater by liquid chromatography/tandem mass spectrometry

(2014) Katherine R. Heal et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

A bioassay for the detection of benzimidazoles reveals their presence in a range of environmental samples

(2014) Terence S. Crofts et al.   Frontiers in Microbiology

Nutrient cross-feeding in the microbial world

(2014) Erica C. Seth et al.   Frontiers in Microbiology

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

FunGene: the functional gene pipeline and repository

(2013) Jordan A. Fish et al.   Frontiers in Microbiology

Versatility in Corrinoid Salvaging and Remodeling Pathways Supports Corrinoid-Dependent Metabolism in Dehalococcoides mccartyi

(2012) Shan Yi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Vitamins in the sea

(2012) S. J. Giovannoni   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Black Queen Hypothesis: Evolution of Dependencies through Adaptive Gene Loss

(2012) J. J. Morris et al.   mBio

Incorporating 16S Gene Copy Number Information Improves Estimates of Microbial Diversity and Abundance

(2012) Steven W. Kembel et al.   PLoS Computational Biology

Influence of vitamin B auxotrophy on nitrogen metabolism in eukaryotic phytoplankton

(2012) Erin M. Bertrand et al.   Frontiers in Microbiology

The Role of B Vitamins in Marine Biogeochemistry

(2011) Sergio A. Sañudo-Wilhelmy et al.   Annual Review of Marine Science

Vitamin B12 biosynthesis gene diversity in the Ross Sea: the identification of a new group of putative polar B12 biosynthesizers

(2011) Erin M. Bertrand et al.   ENVIRONMENTAL MICROBIOLOGY

Light-dependent gene regulation by a coenzyme B12-based photoreceptor

(2011) J. M. Ortiz-Guerrero et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Open resource metagenomics: a model for sharing metagenomic libraries

(2011) J.D. Neufeld et al.   Standards in Genomic Sciences

Reduction of rare soil microbes modifies plant-herbivore interactions

(2010) W. H. Gera Hol et al.   ECOLOGY LETTERS

A ‘rare biosphere’ microorganism contributes to sulfate reduction in a peatland

(2010) Michael Pester et al.   ISME Journal

A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria

(2010) S. Lucker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Most harmful algal bloom species are vitamin B1 and B12 auxotrophs

(2010) Y. Z. Tang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative genomic analyses of nickel, cobalt and vitamin B12 utilization

(2009) Yan Zhang et al.   BMC GENOMICS