FOXA 2 controls the cis ‐regulatory networks of pancreatic cancer cells in a differentiation grade‐specific manner

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Genetic determinants and epigenetic effects of pioneer-factor occupancy

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High constitutive activity of a broad panel of housekeeping and tissue-specificcis-regulatory elements depends on a subset of ETS proteins

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Tracking the Evolution of Non–Small-Cell Lung Cancer

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Control of growth and gut maturation byHoxDgenes and the associated lncRNAHaglr

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Quantitative Multiplex Immunohistochemistry Reveals Myeloid-Inflamed Tumor-Immune Complexity Associated with Poor Prognosis

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Dissection of transcriptional andcis‐regulatory control of differentiation in human pancreatic cancer

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Chromatin Scanning by Dynamic Binding of Pioneer Factors

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The Pioneer Transcription Factor FoxA Maintains an Accessible Nucleosome Configuration at Enhancers for Tissue-Specific Gene Activation

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A renewed model of pancreatic cancer evolution based on genomic rearrangement patterns

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On a FOX hunt: functions of FOX transcriptional regulators in bladder cancer

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Tn5 transposase and tagmentation procedures for massively scaled sequencing projects

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deepTools: a flexible platform for exploring deep-sequencing data

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featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

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Genome engineering using the CRISPR-Cas9 system

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TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

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Foxa1 and Foxa2 Are Essential for Sexual Dimorphism in Liver Cancer

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Differential oestrogen receptor binding is associated with clinical outcome in breast cancer

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Fast gapped-read alignment with Bowtie 2

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Inferring direct DNA binding from ChIP-seq

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Genome-Wide Location Analysis Reveals Distinct Transcriptional Circuitry by Paralogous Regulators Foxa1 and Foxa2

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Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA

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REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

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BEDTools: a flexible suite of utilities for comparing genomic features

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Loss of FOXA1/2 Is Essential for the Epithelial-to-Mesenchymal Transition in Pancreatic Cancer

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Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

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GREAT improves functional interpretation of cis-regulatory regions

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FOXA1 is a key determinant of estrogen receptor function and endocrine response

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A Differentiation-Based Phylogeny of Cancer Subtypes

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GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

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Cancer attractors: A systems view of tumors from a gene network dynamics and developmental perspective

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FoxA1 Translates Epigenetic Signatures into Enhancer-Driven Lineage-Specific Transcription

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Developmental biology of the pancreas: A comprehensive review

(2008) George K. Gittes   DEVELOPMENTAL BIOLOGY

Dynamic regulation of Pdx1 enhancers by Foxa1 and Foxa2 is essential for pancreas development

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Global analysis of in vivo Foxa2-binding sites in mouse adult liver using massively parallel sequencing

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Model-based Analysis of ChIP-Seq (MACS)

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