Model systems for regeneration: zebrafish

A Smart Imaging Workflow for Organ-Specific Screening in a Cystic Kidney Zebrafish Disease Model

(2019) Gunjan Pandey et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Vitamin D Stimulates Cardiomyocyte Proliferation and Controls Organ Size and Regeneration in Zebrafish

(2019) Yanchao Han et al.   DEVELOPMENTAL CELL

A Muscle Stem Cell Support Group: Coordinated Cellular Responses in Muscle Regeneration

(2018) Michael N. Wosczyna et al.   DEVELOPMENTAL CELL

Myocardial Polyploidization Creates a Barrier to Heart Regeneration in Zebrafish

(2018) Juan Manuel González-Rosa et al.   DEVELOPMENTAL CELL

Gene profile of zebrafish fin regeneration offers clues to kinetics, organization and biomechanics of basement membrane

(2018) Pauline Nauroy et al.   MATRIX BIOLOGY

Simultaneous lineage tracing and cell-type identification using CRISPR–Cas9-induced genetic scars

(2018) Bastiaan Spanjaard et al.   NATURE BIOTECHNOLOGY

Transient fibrosis resolves via fibroblast inactivation in the regenerating zebrafish heart

(2018) Héctor Sánchez-Iranzo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A beginner's guide to understanding and implementing the genetic modification of zebrafish

(2018) Sara A. Rafferty et al.   PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY

Switch and Trace: Recombinase Genetics in Zebrafish

(2018) Tom J. Carney et al.   TRENDS IN GENETICS

Nifurpirinol: A more potent and reliable substrate compared to metronidazole for nitroreductase-mediated cell ablations

(2018) David Bergemann et al.   WOUND REPAIR AND REGENERATION

An automated high-resolution in vivo screen in zebrafish to identify chemical regulators of myelination

(2018) Jason J Early et al.   eLife

Light-Sheet Imaging to Elucidate Cardiovascular Injury and Repair

(2018) Yichen Ding et al.   Current Cardiology Reports

Cre/lox -controlled spatio-temporal perturbation of FGF signaling in zebrafish

(2018) Lucia Kirchgeorg et al.   DEVELOPMENTAL DYNAMICS

Whole Organism Chemical Screening Identifies Modulators of Pancreatic β Cell Function

(2018) Hiroki Matsuda et al.   DIABETES

Yap is required for scar formation but not myocyte proliferation during heart regeneration in zebrafish

(2018) Michael A Flinn et al.   CARDIOVASCULAR RESEARCH

In Toto Imaging of Dynamic Osteoblast Behaviors in Regenerating Skeletal Bone

(2018) Ben D. Cox et al.   CURRENT BIOLOGY

Tissue Regeneration Enhancer Elements: A Way to Unlock Endogenous Healing Power

(2018) KaHoua Yang et al.   DEVELOPMENTAL DYNAMICS

Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)/Cas9-mediated kif15 mutations accelerate axonal outgrowth during neuronal development and regeneration in zebrafish

(2018) Zhangji Dong et al.   TRAFFIC

Dynamic control of proinflammatory cytokines Il-1β and Tnf-α by macrophages in zebrafish spinal cord regeneration

(2018) Themistoklis M. Tsarouchas et al.   Nature Communications

Heart Regeneration in the Mexican Cavefish

(2018) William T. Stockdale et al.   Cell Reports

Conditional mutagenesis by oligonucleotide-mediated integration of loxP sites in zebrafish

(2018) Leonard Burg et al.   PLoS Genetics

Genome editing using CRISPR/Cas9-based knock-in approaches in zebrafish

(2017) Shahad Albadri et al.   METHODS

Frequency of mononuclear diploid cardiomyocytes underlies natural variation in heart regeneration

(2017) Michaela Patterson et al.   NATURE GENETICS

A guide to light-sheet fluorescence microscopy for multiscale imaging

(2017) Rory M Power et al.   NATURE METHODS

Transcriptomic, proteomic, and metabolomic landscape of positional memory in the caudal fin of zebrafish

(2017) Jeremy S. Rabinowitz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Targeted Ablation of Pancreatic β Cells in Medaka

(2017) Takayoshi Otsuka et al.   ZOOLOGICAL SCIENCE

The careg element reveals a common regulation of regeneration in the zebrafish myocardium and fin

(2017) Catherine Pfefferli et al.   Nature Communications

Wnt signaling controls pro-regenerative Collagen XII in functional spinal cord regeneration in zebrafish

(2017) Daniel Wehner et al.   Nature Communications

Reciprocal analyses in zebrafish and medaka reveal that harnessing the immune response promotes cardiac regeneration

(2017) Shih-Lei Lai et al.   eLife

Müller Glia Cell Activation in a Laser-induced Retinal Degeneration and Regeneration Model in Zebrafish

(2017) Federica M. Conedera et al.   Jove-Journal of Visualized Experiments

High-Resolution Magnetic Resonance Imaging of the Regenerating Adult Zebrafish Heart

(2017) Jana Koth et al.   Scientific Reports

Zebrafish fin and heart: what's special about regeneration?

(2016) Ivonne M. Sehring et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Spinal motor neurons are regenerated after mechanical lesion and genetic ablation in larval zebrafish

(2016) Jochen Ohnmacht et al.   DEVELOPMENT

Spatially Resolved Genome-wide Transcriptional Profiling Identifies BMP Signaling as Essential Regulator of Zebrafish Cardiomyocyte Regeneration

(2016) Chi-Chung Wu et al.   DEVELOPMENTAL CELL

Multicolor Cell Barcoding Technology for Long-Term Surveillance of Epithelial Regeneration in Zebrafish

(2016) Chen-Hui Chen et al.   DEVELOPMENTAL CELL

IGFBP1 increases β‐cell regeneration by promoting α‐ to β‐cell transdifferentiation

(2016) Jing Lu et al.   EMBO JOURNAL

Macrophage Recruitment Contributes to Regeneration of Mechanosensory Hair Cells in the Zebrafish Lateral Line

(2016) Simón A. Carrillo et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

Modulation of tissue repair by regeneration enhancer elements

(2016) Junsu Kang et al.   NATURE

Fast revascularization of the injured area is essential to support zebrafish heart regeneration

(2016) Rubén Marín-Juez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Injury-induced ctgfa directs glial bridging and spinal cord regeneration in zebrafish

(2016) M. H. Mokalled et al.   SCIENCE

Maintenance of Zebrafish Lines at the European Zebrafish Resource Center

(2016) Robert Geisler et al.   Zebrafish

The Adult Ventricular–Subventricular Zone (V-SVZ) and Olfactory Bulb (OB) Neurogenesis

(2016) Daniel A. Lim et al.   Cold Spring Harbor Perspectives in Biology

Chromatin-remodelling factor Brg1 regulates myocardial proliferation and regeneration in zebrafish

(2016) Chenglu Xiao et al.   Nature Communications

Zebrafish fin regeneration after cryoinjury-induced tissue damage

(2016) Bérénice Chassot et al.   Biology Open

Regulation of transcriptionally active genes via the catalytically inactive Cas9 in C. elegans and D. rerio

(2015) Lijiang Long et al.   CELL RESEARCH

Large-scale live imaging of adult neural stem cells in their endogenous niche

(2015) Nicolas Dray et al.   DEVELOPMENT

Control of tissue growth by Yap relies on cell density and F-actin in zebrafish fin regeneration

(2015) R. Mateus et al.   DEVELOPMENT

Nerves Regulate Cardiomyocyte Proliferation and Heart Regeneration

(2015) Ahmed I. Mahmoud et al.   DEVELOPMENTAL CELL

Chemokine-Guided Angiogenesis Directs Coronary Vasculature Formation in Zebrafish

(2015) Michael R.M. Harrison et al.   DEVELOPMENTAL CELL

Intubation-based anesthesia for long-term time-lapse imaging of adult zebrafish

(2015) Cong Xu et al.   Nature Protocols

Live imaging of adult neural stem cell behavior in the intact and injured zebrafish brain

(2015) J. S. Barbosa et al.   SCIENCE

Telomerase Is Essential for Zebrafish Heart Regeneration

(2015) Dorota Bednarek et al.   Cell Reports

Inexhaustible hair-cell regeneration in young and aged zebrafish

(2015) F. Pinto-Teixeira et al.   Biology Open

Use of the TetON System to Study Molecular Mechanisms of Zebrafish Regeneration

(2015) Daniel Wehner et al.   Jove-Journal of Visualized Experiments

Kidney Regeneration in Adult Zebrafish by Gentamicin Induced Injury

(2015) Caramai N. Kamei et al.   Jove-Journal of Visualized Experiments

Advanced Echocardiography in Adult Zebrafish Reveals Delayed Recovery of Heart Function after Myocardial Cryoinjury

(2015) Selina J. Hein et al.   PLoS One

Denervation impairs regeneration of amputated zebrafish fins

(2014) Mariana G Simões et al.   BMC DEVELOPMENTAL BIOLOGY

Neurogenesis in the Striatum of the Adult Human Brain

(2014) Aurélie Ernst et al.   CELL

Cardiac repair and regenerative potential in the goldfish (Carassius auratus) heart

(2014) Jamie Grivas et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-TOXICOLOGY & PHARMACOLOGY

Macrophages modulate adult zebrafish tail fin regeneration

(2014) T. A. Petrie et al.   DEVELOPMENT

Whole Organism High Content Screening Identifies Stimulators of Pancreatic Beta-Cell Proliferation

(2014) Naoki Tsuji et al.   PLoS One

Use of Echocardiography Reveals Reestablishment of Ventricular Pumping Efficiency and Partial Ventricular Wall Motion Recovery upon Ventricular Cryoinjury in the Zebrafish

(2014) Juan Manuel González-Rosa et al.   PLoS One

Notch signaling regulates cardiomyocyte proliferation during zebrafish heart regeneration

(2014) L. Zhao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Wnt/β-Catenin Signaling Defines Organizing Centers that Orchestrate Growth and Differentiation of the Regenerating Zebrafish Caudal Fin

(2014) Daniel Wehner et al.   Cell Reports

S-Nitrosothiol Signaling Regulates Liver Development and Improves Outcome following Toxic Liver Injury

(2014) Andrew G. Cox et al.   Cell Reports

zebraflash transgenic lines for in vivo bioluminescence imaging of stem cells and regeneration in adult zebrafish

(2013) C.-H. Chen et al.   DEVELOPMENT

Notch regulates blastema proliferation and prevents differentiation during adult zebrafish fin regeneration

(2013) J. Munch et al.   DEVELOPMENT

Site-directed zebrafish transgenesis into single landing sites with the phiC31 integrase system

(2013) Christian Mosimann et al.   DEVELOPMENTAL DYNAMICS

Extensive Conversion of Hepatic Biliary Epithelial Cells to Hepatocytes After Near Total Loss of Hepatocytes in Zebrafish

(2013) Tae–Young Choi et al.   GASTROENTEROLOGY

Adult Zebrafish as a Model System for Cutaneous Wound-Healing Research

(2013) Rebecca Richardson et al.   JOURNAL OF INVESTIGATIVE DERMATOLOGY

Efficient genome editing in zebrafish using a CRISPR-Cas system

(2013) Woong Y Hwang et al.   NATURE BIOTECHNOLOGY

Efficient multiplex biallelic zebrafish genome editing using a CRISPR nuclease system

(2013) Li-En Jao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Zebrafish CreZoo: An Easy-to-Handle Database for Novel CreERT2-Driver Lines

(2013) Peggy Jungke et al.   Zebrafish

An amputation resets positional information to a proximal identity in the regenerating zebrafish caudal fin

(2012) Ana Azevedo et al.   BMC DEVELOPMENTAL BIOLOGY

Migration of cardiomyocytes is essential for heart regeneration in zebrafish

(2012) J. Itou et al.   DEVELOPMENT

The regenerative capacity of the zebrafish heart is dependent on TGF  signaling

(2012) F. Chablais et al.   DEVELOPMENT

Pan-epicardial lineage tracing reveals that epicardium derived cells give rise to myofibroblasts and perivascular cells during zebrafish heart regeneration

(2012) Juan Manuel González-Rosa et al.   DEVELOPMENTAL BIOLOGY

Limited dedifferentiation provides replacement tissue during zebrafish fin regeneration

(2012) Scott Stewart et al.   DEVELOPMENTAL BIOLOGY

Regeneration of Amputated Zebrafish Fin Rays from De Novo Osteoblasts

(2012) Sumeet Pal Singh et al.   DEVELOPMENTAL CELL

Live Imaging Reveals Differing Roles of Macrophages and Neutrophils during Zebrafish Tail Fin Regeneration

(2012) Li Li et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Proteomic Analysis of Zebrafish Caudal Fin Regeneration

(2012) Sandeep Saxena et al.   MOLECULAR & CELLULAR PROTEOMICS

Mammalian heart renewal by pre-existing cardiomyocytes

(2012) Samuel E. Senyo et al.   NATURE

ZFIN, the Zebrafish Model Organism Database: increased support for mutants and transgenics

(2012) Douglas G. Howe et al.   NUCLEIC ACIDS RESEARCH

Characterization of Pax2 Expression in the Goldfish Optic Nerve Head during Retina Regeneration

(2012) Marta Parrilla et al.   PLoS One

Improved Somatic Mutagenesis in Zebrafish Using Transcription Activator-Like Effector Nucleases (TALENs)

(2012) Finola E. Moore et al.   PLoS One

Acute Inflammation Initiates the Regenerative Response in the Adult Zebrafish Brain

(2012) N. Kyritsis et al.   SCIENCE

EuFishBioMed (COST Action BM0804): A European Network to Promote the Use of Small Fishes in Biomedical Research

(2012) Uwe Strähle et al.   Zebrafish

Limb regeneration

(2012) András Simon et al.   Wiley Interdisciplinary Reviews-Developmental Biology

In vivo Electroporation of Morpholinos into the Regenerating Adult Zebrafish Tail Fin

(2012) David R. Hyde et al.   Jove-Journal of Visualized Experiments

The zebrafish heart regenerates after cryoinjury-induced myocardial infarction

(2011) Fabian Chablais et al.   BMC DEVELOPMENTAL BIOLOGY

Clonal analysis by distinct viral vectors identifies bona fide neural stem cells in the adult zebrafish telencephalon and characterizes their division properties and fate

(2011) I. Rothenaigner et al.   DEVELOPMENT

The regenerative capacity of zebrafish reverses cardiac failure caused by genetic cardiomyocyte depletion

(2011) Jinhu Wang et al.   DEVELOPMENT

Retinoic acid signaling controls the formation, proliferation and survival of the blastema during adult zebrafish fin regeneration

(2011) N. Blum et al.   DEVELOPMENT

Rapid BAC selection for tol2-mediated transgenesis in zebrafish

(2011) J. Bussmann et al.   DEVELOPMENT

Extensive scar formation and regression during heart regeneration after cryoinjury in zebrafish

(2011) J. M. Gonzalez-Rosa et al.   DEVELOPMENT

Regeneration of the adult zebrafish brain from neurogenic radial glia-type progenitors

(2011) V. Kroehne et al.   DEVELOPMENT

Transgenerational analysis of transcriptional silencing in zebrafish

(2011) Courtney M. Akitake et al.   DEVELOPMENTAL BIOLOGY

Retinoic Acid Production by Endocardium and Epicardium Is an Injury Response Essential for Zebrafish Heart Regeneration

(2011) Kazu Kikuchi et al.   DEVELOPMENTAL CELL

Regenerative response following stab injury in the adult zebrafish telencephalon

(2011) Martin März et al.   DEVELOPMENTAL DYNAMICS

Fishing for function: zebrafish BAC transgenics for functional genomics

(2011) Sumantra Chatterjee et al.   Molecular BioSystems

Identification of adult nephron progenitors capable of kidney regeneration in zebrafish

(2011) Cuong Q. Diep et al.   NATURE

Transposon-mediated BAC transgenesis in zebrafish

(2011) Maximiliano L Suster et al.   Nature Protocols

Regeneration of Cryoinjury Induced Necrotic Heart Lesions in Zebrafish Is Associated with Epicardial Activation and Cardiomyocyte Proliferation

(2011) Kristin Schnabel et al.   PLoS One

The Regenerative Capacity of the Zebrafish Caudal Fin Is Not Affected by Repeated Amputations

(2011) Ana Sofia Azevedo et al.   PLoS One

Cerebroventricular Microinjection (CVMI) into Adult Zebrafish Brain Is an Efficient Misexpression Method for Forebrain Ventricular Cells

(2011) Caghan Kizil et al.   PLoS One

Transient Regenerative Potential of the Neonatal Mouse Heart

(2011) E. R. Porrello et al.   SCIENCE

zTrap: zebrafish gene trap and enhancer trap database

(2010) Koichi Kawakami et al.   BMC DEVELOPMENTAL BIOLOGY

Kidney regeneration through nephron neogenesis in medaka

(2010) Naoki Watanabe et al.   DEVELOPMENT GROWTH & DIFFERENTIATION

The zebrafish embryo as a model for assessing off-target drug effects

(2010) U. Strahle et al.   Disease Models & Mechanisms

Primary contribution to zebrafish heart regeneration by gata4 + cardiomyocytes

(2010) Kazu Kikuchi et al.   NATURE

Zebrafish heart regeneration occurs by cardiomyocyte dedifferentiation and proliferation

(2010) Chris Jopling et al.   NATURE

Development and Regeneration of the Zebrafish Maxillary Barbel: A Novel Study System for Vertebrate Tissue Growth and Repair

(2010) Elizabeth E. LeClair et al.   PLoS One

Filtering of Visual Information in the Tectum by an Identified Neural Circuit

(2010) Filippo Del Bene et al.   SCIENCE

Compensatory growth mechanisms regulated by BMP and FGF signaling mediate liver regeneration in zebrafish after partial hepatectomy

(2009) Natalia G. Kan et al.   FASEB JOURNAL

Temporally-Controlled Site-Specific Recombination in Zebrafish

(2009) Stefan Hans et al.   PLoS One

Illuminating cell-cycle progression in the developing zebrafish embryo

(2009) M. Sugiyama et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Distinct populations of quiescent and proliferative pancreatic  -cells identified by HOTcre mediated labeling

(2009) D. Hesselson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A histone demethylase is necessary for regeneration in zebrafish

(2009) S. Stewart et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evidence for Cardiomyocyte Renewal in Humans

(2009) Olaf Bergmann et al.   SCIENCE

Gal4/UAS Transgenic Tools and Their Application to Zebrafish

(2008) Marnie E. Halpern et al.   Zebrafish