Genomic and metabolic analysis of Komagataeibacter xylinus DSM 2325 producing bacterial cellulose nanofiber

Complete genome analysis of Gluconacetobacter xylinus CGMCC 2955 for elucidating bacterial cellulose biosynthesis and metabolic regulation

(2018) Miao Liu et al.   Scientific Reports

Comparative genomics of the Komagataeibacter strains-Efficient bionanocellulose producers

(2018) Małgorzata Ryngajłło et al.   MicrobiologyOpen

Comparative genomics of four Mycoplasma species of the human urogenital tract: Analysis of their core genomes and virulence genes

(2017) Orville St. E. Roachford et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Recent advancements in bioreactions of cellular and cell-free systems: A study of bacterial cellulose as a model

(2017) Muhammad Wajid Ullah et al.   KOREAN JOURNAL OF CHEMICAL ENGINEERING

Production of Bacterial Cellulose by Gluconacetobacter hansenii Using Corn Steep Liquor As Nutrient Sources

(2017) Andrea F. S. Costa et al.   Frontiers in Microbiology

Bacterial cellulose as an example product for sustainable production and consumption

(2017) Woo Dae Jang et al.   Microbial Biotechnology

Complete genome sequence of the cellulose-producing strain Komagataeibacter nataicola RZS01

(2017) Heng Zhang et al.   Scientific Reports

Reconstruction of a Genome-scale Metabolic Network of Komagataeibacter nataicola RZS01 for Cellulose Production

(2017) Heng Zhang et al.   Scientific Reports

Systematic engineering of TCA cycle for optimal production of a four-carbon platform chemical 4-hydroxybutyric acid in Escherichia coli

(2016) Sol Choi et al.   METABOLIC ENGINEERING

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

NCBI prokaryotic genome annotation pipeline

(2016) Tatiana Tatusova et al.   NUCLEIC ACIDS RESEARCH

KEGG: new perspectives on genomes, pathways, diseases and drugs

(2016) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Bacterial Cellulose: A Robust Platform for Design of Three Dimensional Carbon-Based Functional Nanomaterials

(2015) Zhen-Yu Wu et al.   ACCOUNTS OF CHEMICAL RESEARCH

Knock-out of glucose dehydrogenase gene in Gluconacetobacter xylinus for bacterial cellulose production enhancement

(2015) Chia-Hung Kuo et al.   BIOTECHNOLOGY AND BIOPROCESS ENGINEERING

Systems strategies for developing industrial microbial strains

(2015) Sang Yup Lee et al.   NATURE BIOTECHNOLOGY

MetaNetX/MNXref – reconciliation of metabolites and biochemical reactions to bring together genome-scale metabolic networks

(2015) Sébastien Moretti et al.   NUCLEIC ACIDS RESEARCH

antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters

(2015) Tilmann Weber et al.   NUCLEIC ACIDS RESEARCH

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

(2015) Ron Caspi et al.   NUCLEIC ACIDS RESEARCH

BiGG Models: A platform for integrating, standardizing and sharing genome-scale models

(2015) Zachary A. King et al.   NUCLEIC ACIDS RESEARCH

GARM: Genome Assembly, Reconciliation and Merging Pipeline

(2014) Luz Soto-Jimenez et al.   CURRENT TOPICS IN MEDICINAL CHEMISTRY

Complete genome sequence of Gluconacetobacter xylinus E25 strain—Valuable and effective producer of bacterial nanocellulose

(2014) Katarzyna Kubiak et al.   JOURNAL OF BIOTECHNOLOGY

Revealing Differences in Metabolic Flux Distributions between a Mutant Strain and Its Parent Strain Gluconacetobacter xylinus CGMCC 2955

(2014) Cheng Zhong et al.   PLoS One

Metabolic flux analysis of Gluconacetobacter xylinus for bacterial cellulose production

(2013) Cheng Zhong et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

COBRApy: COnstraints-Based Reconstruction and Analysis for Python

(2013) Ali Ebrahim et al.   BMC Systems Biology

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

(2013) Chen-Shan Chin et al.   NATURE METHODS

EFICAz2.5: application of a high-precision enzyme function predictor to 396 proteomes

(2012) Narendra Kumar et al.   BIOINFORMATICS

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Description of Komagataeibacter gen. nov., with proposals of new combinations (Acetobacteraceae)

(2012) Yuzo Yamada et al.   JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY

Crystallographic snapshot of cellulose synthesis and membrane translocation

(2012) Jacob L. W. Morgan et al.   NATURE

Subdivision of the genus Gluconacetobacter Yamada, Hoshino and Ishikawa 1998: the proposal of Komagatabacter gen. nov., for strains accommodated to the Gluconacetobacter xylinus group in the α-Proteobacteria

(2011) Yuzo Yamada et al.   ANNALS OF MICROBIOLOGY

Complete Genome Sequence of NBRC 3288, a Unique Cellulose-Nonproducing Strain of Gluconacetobacter xylinus Isolated from Vinegar

(2011) H. Ogino et al.   JOURNAL OF BACTERIOLOGY

N-acetylglucosamine 6-Phosphate Deacetylase (nagA) Is Required for N-acetyl Glucosamine Assimilation in Gluconacetobacter xylinus

(2011) Vikas Yadav et al.   PLoS One

Genome Sequence of a Cellulose-Producing Bacterium, Gluconacetobacter hansenii ATCC 23769

(2010) P. R. Iyer et al.   JOURNAL OF BACTERIOLOGY

Comparative genomics of the genus Bifidobacterium

(2010) F. Bottacini et al.   MICROBIOLOGY-SGM

A protocol for generating a high-quality genome-scale metabolic reconstruction

(2010) Ines Thiele et al.   Nature Protocols

A Flavin Cofactor-Binding PAS Domain Regulates c-di-GMP Synthesis inAxDGC2 fromAcetobacter xylinum

(2009) Yaning Qi et al.   BIOCHEMISTRY

Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths

(2009) Marie Touchon et al.   PLoS Genetics

Algorithm of OMA for large-scale orthology inference

(2008) Alexander CJ Roth et al.   BMC BIOINFORMATICS

Use of Randomized Sampling for Analysis of Metabolic Networks

(2008) Jan Schellenberger et al.   JOURNAL OF BIOLOGICAL CHEMISTRY