Genome‐scale model of Rhodotorula toruloides metabolism

SLIMEr: probing flexibility of lipid metabolism in yeast with an improved constraint-based modeling framework

(2019) Benjamín J. Sánchez et al.   BMC Systems Biology

Enhancement of Torularhodin Production in Rhodosporidium toruloides by Agrobacterium tumefaciens-Mediated Transformation and Culture Condition Optimization

(2019) Ruiqi Bao et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Proteome analysis of xylose metabolism in Rhodotorula toruloides during lipid production

(2019) Ievgeniia A. Tiukova et al.   Biotechnology for Biofuels

Combining evolutionary and metabolic engineering in Rhodosporidium toruloides for lipid production with non-detoxified wheat straw hydrolysates

(2018) Teresa Díaz et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Engineering microbial fatty acid metabolism for biofuels and biochemicals

(2018) Eko Roy Marella et al.   CURRENT OPINION IN BIOTECHNOLOGY

Comprehensive analysis of a metabolic model for lipid production in Rhodosporidium toruloides

(2018) María Teresita Castañeda et al.   JOURNAL OF BIOTECHNOLOGY

Anti-Obesity Effect of Red Radish Coral Sprout Extract by Inhibited Triglyceride Accumulation in a Microbial Evaluation System and in High-Fat Diet-Induced Obese Mice

(2018) Nam Keun Lee et al.   JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY

The Engineering Potential of Rhodosporidium toruloides as a Workhorse for Biotechnological Applications

(2018) Young-Kyoung Park et al.   TRENDS IN BIOTECHNOLOGY

Functional genomics of lipid metabolism in the oleaginous yeast Rhodosporidium toruloides

(2018) Samuel T Coradetti et al.   eLife

Engineering the oleaginous red yeast Rhodotorula glutinis for simultaneous β-carotene and cellulase production

(2018) Hong-Wei Pi et al.   Scientific Reports

Automated generation of genome-scale metabolic draft reconstructions based on KEGG

(2018) Emil Karlsen et al.   BMC BIOINFORMATICS

Delta-9 fatty acid desaturase overexpression enhanced lipid production and oleic acid content in Rhodosporidium toruloides for preferable yeast lipid production

(2018) Yung-Yu Tsai et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor

(2018) Hao Wang et al.   PLoS Computational Biology

Lipid production in Yarrowia lipolytica is maximized by engineering cytosolic redox metabolism

(2017) Kangjian Qiao et al.   NATURE BIOTECHNOLOGY

Microbial oil production in sugarcane bagasse hemicellulosic hydrolysate without nutrient supplementation by a Rhodosporidium toruloides adapted strain

(2017) Nemailla Bonturi et al.   PROCESS BIOCHEMISTRY

Characterization the carotenoid productions and profiles of three Rhodosporidium toruloides mutants from Agrobacterium tumefaciens -mediated transformation

(2017) Xinping Lin et al.   YEAST

Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks

(2017) Sylvain Prigent et al.   PLoS Computational Biology

Effect of Medium pH on Rhodosporidium toruloides NCYC 921 Carotenoid and Lipid Production Evaluated by Flow Cytometry

(2016) Carla Dias et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Combined mutagenesis of Rhodosporidium toruloides for improved production of carotenoids and lipids

(2016) Chaolei Zhang et al.   BIOTECHNOLOGY LETTERS

Genome-scale metabolic modeling of Mucor circinelloides and comparative analysis with other oleaginous species

(2016) Wanwipa Vongsangnak et al.   GENE

EngineeringYarrowia lipolyticaas a platform for synthesis of drop-in transportation fuels and oleochemicals

(2016) Peng Xu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Concomitant Production of Lipids and Carotenoids in Rhodosporidium toruloides under Osmotic Stress Using Response Surface Methodology

(2016) Gunjan Singh et al.   Frontiers in Microbiology

Sustainable source of omega-3 eicosapentaenoic acid from metabolically engineered Yarrowia lipolytica: from fundamental research to commercial production

(2015) Dongming Xie et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

New dual-stage pH control fed-batch cultivation strategy for the improvement of lipids and carotenoids production by the red yeast Rhodosporidium toruloides NCYC 921

(2015) Carla Dias et al.   BIORESOURCE TECHNOLOGY

EngineeringRhodosporidium toruloidesfor increased lipid production

(2015) Shuyan Zhang et al.   BIOTECHNOLOGY AND BIOENGINEERING

Reconstruction and analysis of a genome-scale metabolic model of the oleaginous fungus Mortierella alpina

(2015) Chao Ye et al.   BMC Systems Biology

Dynamics of the Lipid Droplet Proteome of the Oleaginous Yeast Rhodosporidium toruloides

(2015) Zhiwei Zhu et al.   EUKARYOTIC CELL

Lipid production by yeasts growing on biodiesel-derived crude glycerol: strain selection and impact of substrate concentration on the fermentation efficiency

(2015) S.S. Tchakouteu et al.   JOURNAL OF APPLIED MICROBIOLOGY

Biotechnological production of carotenoids by yeasts: an overview

(2014) Luis Mata-Gómez et al.   Microbial Cell Factories

Omega-3 Fatty Acid Biochemistry: Perspectives from Human Nutrition

(2014) Sheila M. Innis   MILITARY MEDICINE

Metabolic engineering of microorganisms to produce omega-3 very long-chain polyunsaturated fatty acids

(2014) Yangmin Gong et al.   PROGRESS IN LIPID RESEARCH

ω3 fatty acid desaturases from microorganisms: structure, function, evolution, and biotechnological use

(2013) Mingxuan Wang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Kinetics of continuous cultivation of the oleaginous yeast Rhodosporidium toruloides

(2013) Hongwei Shen et al.   JOURNAL OF BIOTECHNOLOGY

Metabolic engineering of Saccharomyces cerevisiae for production of fatty acid-derived biofuels and chemicals

(2013) Weerawat Runguphan et al.   METABOLIC ENGINEERING

Production of omega-3 eicosapentaenoic acid by metabolic engineering of Yarrowia lipolytica

(2013) Zhixiong Xue et al.   NATURE BIOTECHNOLOGY

Comparative Proteomics Profile of Lipid-Cumulating Oleaginous Yeast: An iTRAQ-Coupled 2-D LC-MS/MS Analysis

(2013) Jiahua Shi et al.   PLoS One

A genome-scale metabolic model of the lipid-accumulating yeast Yarrowia lipolytica

(2012) Nicolas Loira et al.   BMC Systems Biology

A multi-omic map of the lipid-producing yeast Rhodosporidium toruloides

(2012) Zhiwei Zhu et al.   Nature Communications

Lipids of oleaginous yeasts. Part I: Biochemistry of single cell oil production

(2011) Seraphim Papanikolaou et al.   EUROPEAN JOURNAL OF LIPID SCIENCE AND TECHNOLOGY

Alternative routes of acetyl-CoA synthesis identified by comparative genomic analysis: involvement in the lipid production of oleaginous yeast and fungi

(2011) T. Vorapreeda et al.   MICROBIOLOGY-SGM

Monitoring Rhodosporidium toruloides NCYC 921 batch fermentations growing under carbon and nitrogen limitation by flow cytometry

(2011) Raoni Andrade et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

In Silico Identification of Gene Amplification Targets for Improvement of Lycopene Production

(2010) H. S. Choi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Phosphate-limitation mediated lipid production by Rhodosporidium toruloides

(2010) Siguo Wu et al.   BIORESOURCE TECHNOLOGY

Microbial lipid production by Rhodosporidium toruloides under sulfate-limited conditions

(2010) Siguo Wu et al.   BIORESOURCE TECHNOLOGY

Autophagy-related lipase FgATG15 of Fusarium graminearum is important for lipid turnover and plant infection

(2010) Long Nam Nguyen et al.   FUNGAL GENETICS AND BIOLOGY

MetaPhOrs: orthology and paralogy predictions from multiple phylogenetic evidence using a consistency-based confidence score

(2010) Leszek P. Pryszcz et al.   NUCLEIC ACIDS RESEARCH

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS