QUBIC2: a novel and robust biclustering algorithm for analyses and interpretation of large-scale RNA-Seq data

EBIC: an evolutionary-based parallel biclustering algorithm for pattern discovery

(2018) Patryk Orzechowski et al.   BIOINFORMATICS

It is time to apply biclustering: a comprehensive review of biclustering applications in biological and biomedical data

(2018) Juan Xie et al.   BRIEFINGS IN BIOINFORMATICS

A comprehensive evaluation of module detection methods for gene expression data

(2018) Wouter Saelens et al.   Nature Communications

SC3: consensus clustering of single-cell RNA-seq data

(2017) Vladimir Yu Kiselev et al.   NATURE METHODS

Seq-Well: portable, low-cost RNA sequencing of single cells at high throughput

(2017) Todd M Gierahn et al.   NATURE METHODS

Coming of age: ten years of next-generation sequencing technologies

(2016) Sara Goodwin et al.   NATURE REVIEWS GENETICS

Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse

(2016) Shenglin Mei et al.   NUCLEIC ACIDS RESEARCH

The EcoCyc database: reflecting new knowledge aboutEscherichia coliK-12

(2016) Ingrid M. Keseler et al.   NUCLEIC ACIDS RESEARCH

Context Specific and Differential Gene Co-expression Networks via Bayesian Biclustering

(2016) Chuan Gao et al.   PLoS Computational Biology

Genome-Scale Identification of Cell-Wall-Related Genes in Switchgrass through Comparative Genomics and Computational Analyses of Transcriptomic Data

(2015) Xin Chen et al.   BioEnergy Research

Computational and analytical challenges in single-cell transcriptomics

(2015) Oliver Stegle et al.   NATURE REVIEWS GENETICS

Optimizing genome-scale network reconstructions

(2014) Jonathan Monk et al.   NATURE BIOTECHNOLOGY

Genome-scale identification of cell-wall related genes in Arabidopsis based on co-expression network analysis

(2012) Shan Wang et al.   BMC PLANT BIOLOGY

A comparative analysis of biclustering algorithms for gene expression data

(2012) K. Eren et al.   BRIEFINGS IN BIOINFORMATICS

QServer: A Biclustering Server for Prediction and Assessment of Co-Expressed Gene Clusters

(2012) Fengfeng Zhou et al.   PLoS One

RNA sequencing reveals two major classes of gene expression levels in metazoan cells

(2011) D. Hebenstreit et al.   Molecular Systems Biology

FABIA: factor analysis for bicluster acquisition

(2010) Sepp Hochreiter et al.   BIOINFORMATICS

Expander: from expression microarrays to networks and functions

(2010) Igor Ulitsky et al.   Nature Protocols

The Sequence Read Archive

(2010) R. Leinonen et al.   NUCLEIC ACIDS RESEARCH

QUBIC: a qualitative biclustering algorithm for analyses of gene expression data

(2009) Guojun Li et al.   NUCLEIC ACIDS RESEARCH