Reverse vaccinology and subtractive genomics reveal new therapeutic targets against Mycoplasma pneumoniae : a causative agent of pneumonia

Mycoplasma pneumoniae: A significant but underrated pathogen in paediatric community-acquired lower respiratory tract infections

(2018) Surinder Kumar   INDIAN JOURNAL OF MEDICAL RESEARCH

Subtractive proteomics to identify novel drug targets and reverse vaccinology for the development of chimeric vaccine against Acinetobacter baumannii

(2018) Vandana Solanki et al.   Scientific Reports

Mycoplasma pneumoniae in pediatric patients: Do macrolide-resistance and/or delayed treatment matter?

(2018) Tzu-I Yang et al.   JOURNAL OF MICROBIOLOGY IMMUNOLOGY AND INFECTION

STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

(2018) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

The Immune Epitope Database (IEDB): 2018 update

(2018) Randi Vita et al.   NUCLEIC ACIDS RESEARCH

An In Silico Identification of Common Putative Vaccine Candidates against Treponema pallidum: A Reverse Vaccinology and Subtractive Genomics Based Approach

(2017) Arun Kumar Jaiswal et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

RsgA couples the maturation state of the 30S ribosomal decoding center to activation of its GTPase pocket

(2017) Jorge Pedro López-Alonso et al.   NUCLEIC ACIDS RESEARCH

DrugBank 5.0: a major update to the DrugBank database for 2018

(2017) David S Wishart et al.   NUCLEIC ACIDS RESEARCH

What Are the Most Powerful Immunogen Design Vaccine Strategies?

(2017) Dennis R. Burton   Cold Spring Harbor Perspectives in Biology

An integrative in-silico approach for therapeutic target identification in the human pathogen Corynebacterium diphtheriae

(2017) Syed Babar Jamal et al.   PLoS One

Binding site of MraZ transcription factor in Mollicutes

(2016) G.Y. Fisunov et al.   BIOCHIMIE

GIPSy: Genomic island prediction software

(2016) Siomar C. Soares et al.   JOURNAL OF BIOTECHNOLOGY

Reverse vaccinology 2.0: Human immunology instructs vaccine antigen design

(2016) Rino Rappuoli et al.   JOURNAL OF EXPERIMENTAL MEDICINE

The effects of antibiotics on the microbiome throughout development and alternative approaches for therapeutic modulation

(2016) Amy Langdon et al.   Genome Medicine

Identification of Novel Vaccine Candidates againstCampylobacterthrough Reverse Vaccinology

(2016) Marine Meunier et al.   Journal of Immunology Research

Overview of antimicrobial options for M ycoplasma pneumoniae pneumonia: focus on macrolide resistance

(2015) Bin Cao et al.   Clinical Respiratory Journal

Identification of putative vaccine candidates against Helicobacter pylori exploiting exoproteome and secretome: A reverse vaccinology based approach

(2015) Anam Naz et al.   INFECTION GENETICS AND EVOLUTION

Clinical and epidemiological characteristics in children with community-acquired mycoplasma pneumonia in Taiwan: A nationwide surveillance

(2015) Yun-Ju Ma et al.   JOURNAL OF MICROBIOLOGY IMMUNOLOGY AND INFECTION

Identification of novel vaccine candidates againstAcinetobacter baumanniiusing reverse vaccinology

(2015) Ming-Hsien Chiang et al.   Human Vaccines & Immunotherapeutics

Anti-Infective Activities of Lactobacillus Strains in the Human Intestinal Microbiota: from Probiotics to Gastrointestinal Anti-Infectious Biotherapeutic Agents

(2014) V. Lievin-Le Moal et al.   CLINICAL MICROBIOLOGY REVIEWS

Natural products as antimicrobial agents

(2014) Rabin Gyawali et al.   FOOD CONTROL

Community-Acquired Pneumonia

(2014) Daniel M. Musher et al.   NEW ENGLAND JOURNAL OF MEDICINE

Novel aspects on the pathogenesis of Mycoplasma pneumoniae pneumonia and therapeutic implications

(2014) Takeshi Saraya et al.   Frontiers in Microbiology

Updates on the web-based VIOLIN vaccine database and analysis system

(2013) Yongqun He et al.   NUCLEIC ACIDS RESEARCH

DoGSiteScorer: a web server for automatic binding site prediction, analysis and druggability assessment

(2012) A. Volkamer et al.   BIOINFORMATICS

Rapid Effectiveness of Minocycline or Doxycycline Against Macrolide-Resistant Mycoplasma pneumoniae Infection in a 2011 Outbreak Among Japanese Children

(2012) Takafumi Okada et al.   CLINICAL INFECTIOUS DISEASES

ZINC: A Free Tool to Discover Chemistry for Biology

(2012) John J. Irwin et al.   Journal of Chemical Information and Modeling

PIPS: Pathogenicity Island Prediction Software

(2012) Siomar C. Soares et al.   PLoS One

A Novel Rapid DNA Microarray Assay Enables Identification of 37 Mycoplasma Species and Highlights Multiple Mycoplasma Infections

(2012) Christiane Schnee et al.   PLoS One

Gegenees: Fragmented Alignment of Multiple Genomes for Determining Phylogenomic Distances and Genetic Signatures Unique for Specified Target Groups

(2012) Joakim Ågren et al.   PLoS One

The new multicomponent vaccine against meningococcal serogroup B, 4CMenB: Immunological, functional and structural characterization of the antigens

(2012) Davide Serruto et al.   VACCINE

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

(2011) Nabil-Fareed Alikhan et al.   BMC GENOMICS

Mycoplasma pneumoniae: susceptibility and resistance to antibiotics

(2011) Cécile Bébéar et al.   Future Microbiology

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

Open Babel: An open chemical toolbox

(2011) Noel M O'Boyle et al.   Journal of Cheminformatics

Genome-scale diversity and niche adaptation analysis of Lactococcus lactis by comparative genome hybridization using multi-strain arrays

(2011) Roland J. Siezen et al.   Microbial Biotechnology

Structural modelling and comparative analysis of homologous, analogous and specific proteins from Trypanosoma cruzi versus Homo sapiens: putative drug targets for chagas' disease treatment

(2010) Priscila VSZ Capriles et al.   BMC GENOMICS

Vaxign: The First Web-Based Vaccine Design Program for Reverse Vaccinology and Applications for Vaccine Development

(2010) Yongqun He et al.   JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY

AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility

(2009) Garrett M. Morris et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Vaccines to prevent pneumonia and improve child survival

(2008) Shabir Madhi   BULLETIN OF THE WORLD HEALTH ORGANIZATION

Epidemiology and etiology of childhood pneumonia

(2008) Igor Rudan   BULLETIN OF THE WORLD HEALTH ORGANIZATION

Prediction of surface exposed proteins in Streptococcus pyogenes, with a potential application to other Gram-positive bacteria

(2008) Aleksandr Barinov et al.   PROTEOMICS