4.6 Article

Quantitative Trait Nucleotides Impacting the Technological Performances of Industrial Saccharomyces cerevisiae Strains

Journal

FRONTIERS IN GENETICS
Volume 10, Issue -, Pages -

Publisher

FRONTIERS MEDIA SA
DOI: 10.3389/fgene.2019.00683

Keywords

biotechnology; fermentation; QTL; QTN; QTG; yeast; variant; aroma

Ask authors/readers for more resources

The budding yeast Saccharomyces cerevisiae is certainly the prime industrial microorganism and is related to many biotechnological applications including food fermentations, biofuel production, green chemistry, and drug production. A noteworthy characteristic of this species is the existence of subgroups well adapted to specific processes with some individuals showing optimal technological traits. In the last 20 years, many studies have established a link between quantitative traits and single-nucleotide polymorphisms found in hundreds of genes. These natural variations constitute a pool of QTNs (quantitative trait nucleotides) that modulate yeast traits of economic interest for industry. By selecting a subset of genes functionally validated, a total of 284 QTNs were inventoried. Their distribution across pan and core genome and their frequency within the 1,011 Saccharomyces cerevisiae genomes were analyzed. We found that 150 of the 284 QTNs have a frequency lower than 5%, meaning that these variants would be undetectable by genome-wide association studies (GWAS). This analysis also suggests that most of the functional variants are private to a subpopulation, possibly due to their adaptive role to specific industrial environment. In this review, we provide a literature survey of their phenotypic impact and discuss the opportunities and the limits of their use for industrial strain selection.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.6
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Biochemistry & Molecular Biology

Many interspecific chromosomal introgressions are highly prevalent in Holarctic Saccharomyces uvarum strains found in human-related fermentations

Warren Albertin, Maria Chernova, Pascal Durrens, Erwan Guichoux, David James Sherman, Isabelle Masneuf-Pomarede, Philippe Marullo

YEAST (2018)

Article Multidisciplinary Sciences

Wine yeast phenomics: A standardized fermentation method for assessing quantitative traits of Saccharomyces cerevisiae strains in enological conditions

Emilien Peltier, Margaux Bernard, Marine Trujillo, Duyen Prodhomme, Jean-Christophe Barbe, Yves Gibon, Philippe Marullo

PLOS ONE (2018)

Article Biotechnology & Applied Microbiology

Dissection of the molecular bases of genotype x environment interactions: a study of phenotypic plasticity of Saccharomyces cerevisiae in grape juices

Emilien Peltier, Vikas Sharma, Maria Marti Raga, Miguel Roncoroni, Margaux Bernard, Vladimir Jiranek, Yves Gibon, Philippe Marullo

BMC GENOMICS (2018)

Article Microbiology

SSU1Checkup, a Rapid Tool for Detecting Chromosomal Rearrangements Related to theSSU1Promoter inSaccharomyces cerevisiae: An Ecological and Technological Study on Wine Yeast

Philippe Marullo, Olivier Claisse, Maria Laura Raymond Eder, Marine Borlin, Nadine Feghali, Margaux Bernard, Jean-Luc Legras, Warren Albertin, Alberto Luis Rosa, Isabelle Masneuf-Pomarede

FRONTIERS IN MICROBIOLOGY (2020)

Article Biotechnology & Applied Microbiology

Role ofSaccharomyces cerevisiaeNutrient Signaling Pathways During Winemaking: A Phenomics Approach

Beatriz Vallejo, Emilien Peltier, Victor Garrigos, Emilia Matallana, Philippe Marullo, Agustin Aranda

FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY (2020)

Article Biochemistry & Molecular Biology

Metabolic, Organoleptic and Transcriptomic Impact of Saccharomyces cerevisiae Genes Involved in the Biosynthesis of Linear and Substituted Esters

Philippe Marullo, Marine Trujillo, Remy Viannais, Lucas Hercman, Sabine Guillaumie, Benoit Colonna-Ceccaldi, Warren Albertin, Jean-Christophe Barbe

Summary: Esters, including higher alcohol acetates, fatty acid ethyl esters, and substituted ethyl esters, play a significant role in the organoleptic properties of beverages. Research on the enzymatic and genetic levels has enhanced our understanding of ester biosynthesis and revealed unsuspected regulatory roles of ester metabolism in genome expression.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2021)

Article Microbiology

Marker Assisted Selection of Malic-Consuming Saccharomyces cerevisiae Strains for Winemaking. Efficiency and Limits of a QTL's Driven Breeding Program

Charlotte Vion, Emilien Peltier, Margaux Bernard, Maitena Muro, Philippe Marullo

Summary: Breeding programs taking advantage of the diversity in natural Saccharomyces cerevisiae yeast strains are used to select individuals with outlier properties for winemaking, improving malic acid consumption capacity. Selected individuals greatly reduce malic acid content, show robustness to the environment, and accelerate malolactic fermentations by Oenococcus oeni.

JOURNAL OF FUNGI (2021)

Article Biotechnology & Applied Microbiology

QTL mapping: an innovative method for investigating the genetic determinism of yeast-bacteria interactions in wine

Louise Bartle, Emilien Peltier, Joanna F. Sundstrom, Krista Sumby, James G. Mitchell, Vladimir Jiranek, Philippe Marullo

Summary: Through QTL analysis, it was discovered that the genetic makeup of S. cerevisiae can impact the ability of O. oeni to complete malolactic fermentation, specifically associated with the SSU1 gene.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2021)

Article Genetics & Heredity

Dissection of quantitative trait loci in the Lachancea waltii yeast species highlights major hotspots

Emilien Peltier, Sabrina Bibi-Triki, Fabien Dutreux, Claudia Caradec, Anne Friedrich, Bertrand Llorente, Joseph Schacherer

Summary: This study investigated the genetic basis of complex traits in the non-model yeast species Lachancea waltii, identifying 86 quantitative trait loci impacting growth in various conditions. The findings revealed two major QTL hotspots and highlighted a trade-off between advantageous and disadvantageous alleles for different growth conditions. Comparison with a closely related species showed no shared QTL, indicating the diverse genetic architecture of quantitative traits across yeast species.

G3-GENES GENOMES GENETICS (2021)

Article Biotechnology & Applied Microbiology

Wine yeast species show strong inter- and intra-specific variability in their sensitivity to ultraviolet radiation

Etienne Pilard, Jules Harrouard, Cecile Miot-Sertier, Philippe Marullo, Warren Albertin, Remy Ghidossi

Summary: The study focuses on the use of UV-C treatment for wine preservation and found that different yeast strains have varied responses to UV-C treatment at the interspecific level. Interestingly, cellar-resident Brettanomyces species were found to be more sensitive to UV-C compared to vineyard-resident species. Intra-specific variation in UV-C sensitivity was also observed, indicating the potential of UV-C utilization against wine yeast spoilage at the cellar scale.

FOOD MICROBIOLOGY (2021)

Article Agriculture, Multidisciplinary

Impact of Grape Maturity on Ester Composition and Sensory Properties of Merlot and Tempranillo Wines

Marine Trujillo, Marina Bely, Warren Albertin, Isabelle Masneuf-Pornarede, Benoit Colonna-Ceccaldi, Philippe Marullo, Jean-Christophe Barbe

Summary: The goal of this study was to evaluate the impact of maturity level on grape composition and its effect on wine ester composition and aromatic expression. The results showed that higher maturity level in Merlot grapes resulted in lower concentrations of fatty acid ethyl esters and higher concentrations of alcohol acetates and substituted ethyl esters. Sensory analysis confirmed these findings, with increased maturity leading to decreased fruity aromatic expression in Merlot wines. Esters play an important role in the overall fruity aromatic expression of Merlot wines, and their levels are influenced by factors other than sugar and amino acid content in the grapes.

JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY (2022)

Article Biotechnology & Applied Microbiology

Evaluating the influence of operational parameters of pulsed light on wine related yeasts: focus on inter- and intra-specific variability sensitivity

Jules Harrouard, Etienne Pilard, Cecile Miot-Sertier, Lena Pouget, Philippe Marullo, Giovanna Ferrari, Gianpiero Pataro, Warren Albertin

Summary: This study investigates the efficiency of pulsed light (PL) treatment for managing microorganisms in wine, particularly focusing on the sensitivity of Brettanomyces bruxellensis strains. The results show that PL treatment can effectively reduce the number of different B. bruxellensis strains in wine, highlighting its potential for wine microbial stabilization.

FOOD MICROBIOLOGY (2023)

No Data Available