Many interspecific chromosomal introgressions are highly prevalent in Holarctic Saccharomyces uvarum strains found in human-related fermentations

Genomic signatures of adaptation to wine biological ageing conditions in biofilm-forming flor yeasts

(2017) A. L. Coi et al.   MOLECULAR ECOLOGY

Extensive Copy Number Variation in Fermentation-Related Genes Among Saccharomyces cerevisiae Wine Strains

(2017) Jacob Steenwyk et al.   G3-Genes Genomes Genetics

Domestication and Divergence of Saccharomyces cerevisiae Beer Yeasts

(2016) Brigida Gallone et al.   CELL

Whole Genome Comparison Reveals High Levels of Inbreeding and Strain Redundancy Across the Spectrum of Commercial Wine Strains of Saccharomyces cerevisiae

(2016) Anthony R. Borneman et al.   G3-Genes Genomes Genetics

Speciation driven by hybridization and chromosomal plasticity in a wild yeast

(2016) Jean-Baptiste Leducq et al.   Nature Microbiology

Adaptive Horizontal Gene Transfers between Multiple Cheese-Associated Fungi

(2015) Jeanne Ropars et al.   CURRENT BIOLOGY

Evolutionary Advantage Conferred by an Eukaryote-to-Eukaryote Gene Transfer Event in Wine Yeasts

(2015) Souhir Marsit et al.   MOLECULAR BIOLOGY AND EVOLUTION

Population structure and reticulate evolution ofSaccharomyces eubayanusand its lager-brewing hybrids

(2014) David Peris et al.   MOLECULAR ECOLOGY

Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA

(2014) Emilia Huerta-Sánchez et al.   NATURE

A Gondwanan imprint on global diversity and domestication of wine and cider yeast Saccharomyces uvarum

(2014) Pedro Almeida et al.   Nature Communications

Insights into the Dekkera bruxellensis Genomic Landscape: Comparative Genomics Reveals Variations in Ploidy and Nutrient Utilisation Potential amongst Wine Isolates

(2014) Anthony R. Borneman et al.   PLoS Genetics

Recurrent Rearrangement during Adaptive Evolution in an Interspecific Yeast Hybrid Suggests a Model for Rapid Introgression

(2013) Barbara Dunn et al.   PLoS Genetics

The Roles of Whole-Genome and Small-Scale Duplications in the Functional Specialization of Saccharomyces cerevisiae Genes

(2013) Mario A. Fares et al.   PLoS Genetics

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Analysis of the Saccharomyces cerevisiae pan-genome reveals a pool of copy number variants distributed in diverse yeast strains from differing industrial environments

(2012) B. Dunn et al.   GENOME RESEARCH

Evolutionary Role of Interspecies Hybridization and Genetic Exchanges in Yeasts

(2012) Lucia Morales et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Surprisingly diverged populations ofSaccharomyces cerevisiaein natural environments remote from human activity

(2012) Qi-Ming Wang et al.   MOLECULAR ECOLOGY

Insights into the Life Cycle of Yeasts from the CTG Clade Revealed by the Analysis of the Millerozyma (Pichia) farinosa Species Complex

(2012) Sandrine Mallet et al.   PLoS One

Polyploidy in fungi: evolution after whole-genome duplication

(2012) W. Albertin et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Divergence of the Yeast Transcription Factor FZF1 Affects Sulfite Resistance

(2012) Elizabeth K. Engle et al.   PLoS Genetics

Advances in Quantitative Trait Analysis in Yeast

(2012) Gianni Liti et al.   PLoS Genetics

Amplification of a Zygosaccharomyces bailii DNA Segment in Wine Yeast Genomes by Extrachromosomal Circular DNA Formation

(2011) Virginie Galeote et al.   PLoS One

Microbe domestication and the identification of the wild genetic stock of lager-brewing yeast

(2011) D. Libkind et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Awesome Power of Yeast Evolutionary Genetics: New Genome Sequences and Strain Resources for the Saccharomyces sensu stricto Genus

(2011) Devin R. Scannell et al.   G3-Genes Genomes Genetics

Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads

(2010) G. Lunter et al.   GENOME RESEARCH

Reassessment of phenotypic traits for Saccharomyces bayanus var. uvarum wine yeast strains

(2010) Isabelle Masneuf-Pomarède et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Remarkably ancient balanced polymorphisms in a multi-locus gene network

(2010) Chris Todd Hittinger et al.   NATURE

Yeast evolutionary genomics

(2010) Bernard Dujon   NATURE REVIEWS GENETICS

Genomic Diversity and Introgression in O. sativa Reveal the Impact of Domestication and Breeding on the Rice Genome

(2010) Keyan Zhao et al.   PLoS One

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Rapid fixation of non-native alleles revealed by genome-wide SNP analysis of hybrid tiger salamanders

(2009) Benjamin M Fitzpatrick et al.   BMC EVOLUTIONARY BIOLOGY

Genome Sequence of the Lager Brewing Yeast, an Interspecies Hybrid

(2009) Y. Nakao et al.   DNA RESEARCH

Comparative genomics of protoploid Saccharomycetaceae

(2009) et al.   GENOME RESEARCH

Evidence of different fermentation behaviours of two indigenous strains ofSaccharomyces cerevisiaeandSaccharomyces uvarumisolated from Amarone wine

(2009) E. Tosi et al.   JOURNAL OF APPLIED MICROBIOLOGY

Population genomics of domestic and wild yeasts

(2009) Gianni Liti et al.   NATURE

Eukaryote-to-eukaryote gene transfer events revealed by the genome sequence of the wine yeast Saccharomyces cerevisiae EC1118

(2009) M. Novo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Natural Populations of Saccharomyces kudriavzevii in Portugal Are Associated with Oak Bark and Are Sympatric with S. cerevisiae and S. paradoxus

(2008) J. P. Sampaio et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A multispecies-based taxonomic microarray reveals interspecies hybridization and introgression inSaccharomyces cerevisiae

(2008) Ludo A. H. Muller et al.   FEMS YEAST RESEARCH