The core microbiome bonds the Alpine bog vegetation to a transkingdom metacommunity

The community ecology of pathogens: coinfection, coexistence and community composition

(2015) Eric W. Seabloom et al.   ECOLOGY LETTERS

Cross-kingdom similarities in microbiome functions

(2015) Rodrigo Mendes et al.   ISME Journal

The importance of the microbiome of the plant holobiont

(2015) Philippe Vandenkoornhuyse et al.   NEW PHYTOLOGIST

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Plant genotype-specific archaeal and bacterial endophytes but similar Bacillus antagonists colonize Mediterranean olive trees

(2015) Henry Müller et al.   Frontiers in Microbiology

Expanding the Verrucomicrobial Methanotrophic World: Description of Three Novel Species of Methylacidimicrobium gen. nov.

(2014) Muriel C. F. van Teeseling et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Distribution and diversity ofVerrucomicrobiamethanotrophs in geothermal and acidic environments

(2014) Christine E. Sharp et al.   ENVIRONMENTAL MICROBIOLOGY

TheSphagnummicrobiome supports bog ecosystem functioning under extreme conditions

(2014) Anastasia Bragina et al.   MOLECULAR ECOLOGY

S phagnum physiology in the context of changing climate: emergent influences of genomics, modelling and host-microbiome interactions on understanding ecosystem function

(2014) DAVID J. WESTON et al.   PLANT CELL AND ENVIRONMENT

Gene expression in mycorrhizal orchid protocorms suggests a friendly plant–fungus relationship

(2014) Silvia Perotto et al.   PLANTA

Relationships between phyllosphere bacterial communities and plant functional traits in a neotropical forest

(2014) S. W. Kembel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Unraveling the plant microbiome: looking back and future perspectives

(2014) Gabriele Berg et al.   Frontiers in Microbiology

The impact of the pathogen Rhizoctonia solani and its beneficial counterpart Bacillus amyloliquefaciens on the indigenous lettuce microbiome

(2014) Armin Erlacher et al.   Frontiers in Microbiology

Structure and Functions of the Bacterial Microbiota of Plants

(2013) Davide Bulgarelli et al.   Annual Review of Plant Biology

Nitrogen fixation and methanotrophy in forest mosses along a N deposition gradient

(2013) Sanna M. Leppänen et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Endophytic bacteria of Sphagnum mosses as promising objects of agricultural microbiology

(2013) A. V. Shcherbakov et al.   MICROBIOLOGY

Computational meta'omics for microbial community studies

(2013) N. Segata et al.   Molecular Systems Biology

Pyrosequencing-Based Assessment of the Bacteria Diversity in Surface and Subsurface Peat Layers of a Northern Wetland, with Focus on Poorly Studied Phyla and Candidate Divisions

(2013) Yulia M. Serkebaeva et al.   PLoS One

Methanotrophy induces nitrogen fixation during peatland development

(2013) T. Larmola et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Insights into functional bacterial diversity and its effects on Alpine bog ecosystem functioning

(2013) Anastasia Bragina et al.   Scientific Reports

Vertical transmission explains the specific Burkholderia pattern in Sphagnum mosses at multi-geographic scale

(2013) Anastasia Bragina et al.   Frontiers in Microbiology

Next-Generation Bio-Products Sowing the Seeds of Success for Sustainable Agriculture

(2013) Gabriele Berg et al.   Agronomy-Basel

Organic carbon transformations in high-Arctic peat soils: key functions and microorganisms

(2012) Alexander Tveit et al.   ISME Journal

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Transfer of fixed-N from N2-fixing cyanobacteria associated with the moss Sphagnum riparium results in enhanced growth of the moss

(2012) Andreas Berg et al.   PLANT AND SOIL

The Application of Ecological Theory Toward an Understanding of the Human Microbiome

(2012) E. K. Costello et al.   SCIENCE

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Interactive metagenomic visualization in a Web browser

(2011) Brian D Ondov et al.   BMC BIOINFORMATICS

Beyond the Venn diagram: the hunt for a core microbiome

(2011) Ashley Shade et al.   ENVIRONMENTAL MICROBIOLOGY

Sphagnum mosses harbour highly specific bacterial diversity during their whole lifecycle

(2011) Anastasia Bragina et al.   ISME Journal

Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice

(2011) Claudia Knief et al.   ISME Journal

Bayesian community-wide culture-independent microbial source tracking

(2011) Dan Knights et al.   NATURE METHODS

Metaorganisms as the new frontier

(2011) Thomas C.G. Bosch et al.   ZOOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

The role ofSphagnummosses in the methane cycling of a boreal mire

(2010) Tuula Larmola et al.   ECOLOGY

The Bryosphere: An Integral and Influential Component of the Earth’s Biosphere

(2010) Zoë Lindo et al.   ECOSYSTEMS

UniFrac: an effective distance metric for microbial community comparison

(2010) Catherine Lozupone et al.   ISME Journal

Global prevalence of methane oxidation by symbiotic bacteria in peat-moss ecosystems

(2010) Nardy Kip et al.   Nature Geoscience

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere

(2009) Gabriele Berg et al.   FEMS MICROBIOLOGY ECOLOGY

The rhizosphere zoo: An overview of plant-associated communities of microorganisms, including phages, bacteria, archaea, and fungi, and of some of their structuring factors

(2009) M. Buée et al.   PLANT AND SOIL

Environmental, genomic and taxonomic perspectives on methanotrophicVerrucomicrobia

(2009) Huub J. M. Op den Camp et al.   Environmental Microbiology Reports

Archaea Dominate the Ammonia-Oxidizing Community in the Rhizosphere of the Freshwater Macrophyte Littorella uniflora

(2008) M. Herrmann et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Cyanobacteria-bryophyte symbioses

(2008) D. G. Adams et al.   JOURNAL OF EXPERIMENTAL BOTANY

Ecosystem Feedbacks and Nitrogen Fixation in Boreal Forests

(2008) T. H. DeLuca et al.   SCIENCE