Comparing the Microbial Community in Four Stomach of Dairy Cattle, Yellow Cattle and Three Yak Herds in Qinghai-Tibetan Plateau

Nutritional Interventions Improved Rumen Functions and Promoted Compensatory Growth of Growth-Retarded Yaks as Revealed by Integrated Transcripts and Microbiome Analyses

(2019) Rui Hu et al.   Frontiers in Microbiology

Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection

(2018) Rekha Seshadri et al.   NATURE BIOTECHNOLOGY

Comprehensive skin microbiome analysis reveals the uniqueness of human skin and evidence for phylosymbiosis within the class Mammalia

(2018) Ashley A. Ross et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Drosophila melanogaster Gut Microbiota Provisions Thiamine to Its Host

(2018) David R. Sannino et al.   mBio

Persistence of Cellulolytic Bacteria Fibrobacter and Treponema After Short-Term Corn Stover-Based Dietary Intervention Reveals the Potential to Improve Rumen Fibrolytic Function

(2018) Xiao Xie et al.   Frontiers in Microbiology

Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat

(2018) M. Lisandra Zepeda Mendoza et al.   Nature Ecology & Evolution

Microbial diversity in the rumen, reticulum, omasum, and abomasum of yak on a rapid fattening regime in an agro-pastoral transition zone

(2018) Dan Xue et al.   JOURNAL OF MICROBIOLOGY

Exploring the Spatial-Temporal Microbiota of Compound Stomachs in a Pre-weaned Goat Model

(2018) Yu Lei et al.   Frontiers in Microbiology

Feed efficiency phenotypes in lambs involve changes in ruminal, colonic, and small-intestine-located microbiota1

(2017) K. Perea et al.   JOURNAL OF ANIMAL SCIENCE

Comparative Analysis of the Gut Microbial Communities in Forest and Alpine Musk Deer Using High-Throughput Sequencing

(2017) Xiaolong Hu et al.   Frontiers in Microbiology

Assessment of Ruminal Bacterial and Archaeal Community Structure in Yak (Bos grunniens)

(2017) Zhenming Zhou et al.   Frontiers in Microbiology

Dynamic microbiome evolution in social bees

(2017) Waldan K. Kwong et al.   Science Advances

Gut Microbiome Associates With Lifetime Cardiovascular Disease Risk Profile Among Bogalusa Heart Study ParticipantsNovelty and Significance

(2016) Tanika N. Kelly et al.   CIRCULATION RESEARCH

Convergent Evolution of Rumen Microbiomes in High-Altitude Mammals

(2016) Zhigang Zhang et al.   CURRENT BIOLOGY

Cospeciation of gut microbiota with hominids

(2016) A. H. Moeller et al.   SCIENCE

Phylosymbiosis: Relationships and Functional Effects of Microbial Communities across Host Evolutionary History

(2016) Andrew W. Brooks et al.   PLOS BIOLOGY

A Phylogenomic Analysis of the Bacterial Phylum Fibrobacteres

(2016) Nurdyana Abdul Rahman et al.   Frontiers in Microbiology

Evaluation of composition and individual variability of rumen microbiota in yaks by 16S rRNA high-throughput sequencing technology

(2015) Wei Guo et al.   ANAEROBE

Dietary Fiber-Induced Improvement in Glucose Metabolism Is Associated with Increased Abundance of Prevotella

(2015) Petia Kovatcheva-Datchary et al.   Cell Metabolism

Cecum microbial communities from steers differing in feed efficiency1,2,3

(2015) P. R. Myer et al.   JOURNAL OF ANIMAL SCIENCE

Production of butyrate from lysine and the Amadori product fructoselysine by a human gut commensal

(2015) Thi Phuong Nam Bui et al.   Nature Communications

Yak whole-genome resequencing reveals domestication signatures and prehistoric population expansions

(2015) Qiang Qiu et al.   Nature Communications

Comparative analyses of fecal microbiota in Tibetan and Chinese Han living at low or high altitude by barcoded 454 pyrosequencing

(2015) Long Li et al.   Scientific Reports

Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range

(2015) Gemma Henderson et al.   Scientific Reports

Characterising the bacterial microbiota across the gastrointestinal tracts of dairy cattle: membership and potential function

(2015) Shengyong Mao et al.   Scientific Reports

Transmissible microbial and metabolomic remodeling by soluble dietary fiber improves metabolic homeostasis

(2015) Baokun He et al.   Scientific Reports

Taxonomic Identification of Commensal Bacteria Associated with the Mucosa and Digesta throughout the Gastrointestinal Tracts of Preweaned Calves

(2014) Nilusha Malmuthuge et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Unique aspects of fiber degradation by the ruminal ethanologen Ruminococcus albus 7 revealed by physiological and transcriptomic analysis

(2014) Melissa R Christopherson et al.   BMC GENOMICS

Human Genetics Shape the Gut Microbiome

(2014) Julia K. Goodrich et al.   CELL

Comparative metabolomics in vegans and omnivores reveal constraints on diet-dependent gut microbiota metabolite production

(2014) Gary D Wu et al.   GUT

Agriculture: Steps to sustainable livestock

(2014) Mark C. Eisler et al.   NATURE

Bacteria and Methanogens Differ along the Gastrointestinal Tract of Chinese Roe Deer (Capreolus pygargus)

(2014) Zhipeng Li et al.   PLoS One

Sympatric chimpanzees and gorillas harbor convergent gut microbial communities

(2013) A. H. Moeller et al.   GENOME RESEARCH

Intestinimonas butyriciproducens gen. nov., sp. nov., a butyrate-producing bacterium from the mouse intestine

(2013) K. Klaring et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Spatial heterogeneity and co-occurrence patterns of human mucosal-associated intestinal microbiota

(2013) Zhigang Zhang et al.   ISME Journal

Exploring the bovine rumen bacterial community from birth to adulthood

(2013) Elie Jami et al.   ISME Journal

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Characterizing the microbiota across the gastrointestinal tract of a Brazilian Nelore steer

(2013) Marcelo Nagem Valério de Oliveira et al.   VETERINARY MICROBIOLOGY

Comparison of methanogen diversity of yak (Bos grunniens) and cattle (Bos taurus) from the Qinghai-Tibetan plateau, China

(2012) Xiao Huang et al.   BMC MICROBIOLOGY

Description of Alloprevotella rava gen. nov., sp. nov., isolated from the human oral cavity, and reclassification of Prevotella tannerae Moore et al. 1994 as Alloprevotella tannerae gen. nov., comb. nov.

(2012) J. Downes et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

The yak genome and adaptation to life at high altitude

(2012) Qiang Qiu et al.   NATURE GENETICS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Metagenomic Insights into the Fibrolytic Microbiome in Yak Rumen

(2012) Xin Dai et al.   PLoS One

Biochemical Characterization and Relative Expression Levels of Multiple Carbohydrate Esterases of the Xylanolytic Rumen Bacterium Prevotella ruminicola 23 Grown on an Ester-Enriched Substrate

(2011) Mirjam A. Kabel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Immobilization of glucose oxidase into polyaniline nanofiber matrix for biofuel cell applications

(2011) Hyeongseok Kim et al.   BIOSENSORS & BIOELECTRONICS

Rumen Microbial Population Dynamics during Adaptation to a High-Grain Diet

(2010) S. C. Fernando et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genetic diversity and diet specificity of ruminal Prevotella revealed by 16S rRNA gene-based analysis

(2010) Aschalew Z. Bekele et al.   FEMS MICROBIOLOGY LETTERS

RUMINANT NUTRITION SYMPOSIUM: Role of fermentation acid absorption in the regulation of ruminal pH12

(2010) J. R. Aschenbach et al.   JOURNAL OF ANIMAL SCIENCE

Comparative Genome Analysis of Prevotella ruminicola and Prevotella bryantii: Insights into Their Environmental Niche

(2010) Janaki Purushe et al.   MICROBIAL ECOLOGY

Xylan degradation, a metabolic property shared by rumen and human colonic Bacteroidetes

(2010) Dylan Dodd et al.   MOLECULAR MICROBIOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis

(2008) Harry J. Flint et al.   NATURE REVIEWS MICROBIOLOGY