Extreme Diversity of Mycoviruses Present in Isolates of Rhizoctonia solani AG2-2 LP From Zoysia japonica From Brazil

Biological and molecular characterization of Chenopodium quinoa mitovirus 1 reveals a distinct sRNA response compared to cytoplasmic RNA viruses.

(2019) L. Nerva et al.   JOURNAL OF VIROLOGY

The virome of the arbuscular mycorrhizal fungus Gigaspora margarita reveals the first report of DNA fragments corresponding to replicating non-retroviral RNA viruses in fungi

(2018) Massimo Turina et al.   ENVIRONMENTAL MICROBIOLOGY

Evidence for contemporary plant mitoviruses

(2018) Max L. Nibert et al.   VIROLOGY

Diversity of dsRNA Viruses Infecting Rice Sheath Blight Fungus Rhizoctonia solani AG-1 IA

(2018) Zheng Li et al.   Rice Science

Mycoviruses mediate mycotoxin regulation in Aspergillus ochraceus

(2018) L. Nerva et al.   ENVIRONMENTAL MICROBIOLOGY

Origins and Evolution of the Global RNA Virome

(2018) Yuri I. Wolf et al.   mBio

Identification of a Novel Partitivirus of Trichoderma harzianum NFCF319 and Evidence for the Related Antifungal Activity

(2018) Jeesun Chun et al.   Frontiers in Plant Science

Transmission of Penicillium aurantiogriseum partiti-like virus 1 to a new fungal host (Cryphonectria parasitica ) confers higher resistance to salinity and reveals adaptive genomic changes

(2017) Luca Nerva et al.   ENVIRONMENTAL MICROBIOLOGY

UFBoot2: Improving the Ultrafast Bootstrap Approximation

(2017) Diep Thi Hoang et al.   MOLECULAR BIOLOGY AND EVOLUTION

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

Phytopathogenic fungus hosts a plant virus: A naturally occurring cross-kingdom viral infection

(2017) Ida Bagus Andika et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Novel mitoviruses in Rhizoctonia solani AG-3PT infecting potato

(2016) Subha Das et al.   Fungal Biology

Identification of Diverse Mycoviruses through Metatranscriptomics Characterization of the Viromes of Five Major Fungal Plant Pathogens

(2016) Shin-Yi Lee Marzano et al.   JOURNAL OF VIROLOGY

Deep sequencing of mycovirus-derived small RNAs from Botrytis species

(2016) Livia Donaire et al.   MOLECULAR PLANT PATHOLOGY

Redefining the invertebrate RNA virosphere

(2016) Mang Shi et al.   NATURE

CDD/SPARCLE: functional classification of proteins via subfamily domain architectures

(2016) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis

(2016) Jana Trifinopoulos et al.   NUCLEIC ACIDS RESEARCH

Molecular characterization of a new monopartite dsRNA mycovirus from mycorrhizal Thelephora terrestris (Ehrh.) and its detection in soil oribatid mites (Acari: Oribatida)

(2016) Karel Petrzik et al.   VIROLOGY

Multiple approaches for the detection and characterization of viral and plasmid symbionts from a collection of marine fungi

(2016) L. Nerva et al.   VIRUS RESEARCH

Novel mycoviruses discovered from metatranscriptomics survey of soybean phyllosphere phytobiomes

(2016) Shin-Yi Lee Marzano et al.   VIRUS RESEARCH

Virus-derived DNA drives mosquito vector tolerance to arboviral infection

(2016) Bertsy Goic et al.   Nature Communications

Deep Sequencing Analysis Reveals the Mycoviral Diversity of the Virome of an Avirulent Isolate of Rhizoctonia solani AG-2-2 IV

(2016) Anika Bartholomäus et al.   PLoS One

Genome sequence of a novel mycovirus of Rhizoctonia solani, a plant pathogenic fungus

(2015) Jie Zhong et al.   VIRUS GENES

Diagnosis and discovery of fungal viruses using deep sequencing of small RNAs

(2014) E. J. Vainio et al.   JOURNAL OF GENERAL VIROLOGY

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Fungal negative-stranded RNA virus that is related to bornaviruses and nyaviruses

(2014) L. Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A novel mycovirus closely related to viruses in the genus Alphapartitivirus confers hypovirulence in the phytopathogenic fungus Rhizoctonia solani

(2014) Li Zheng et al.   VIROLOGY

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach

(2013) Christoph Hahn et al.   NUCLEIC ACIDS RESEARCH

Using Tablet for visual exploration of second-generation sequencing data

(2012) I. Milne et al.   BRIEFINGS IN BIOINFORMATICS

New and continuing developments at PROSITE

(2012) Christian J. A. Sigrist et al.   NUCLEIC ACIDS RESEARCH

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

Compatibility with Killer Explains the Rise of RNAi-Deficient Fungi

(2011) I. A. Drinnenberg et al.   SCIENCE

A geminivirus-related DNA mycovirus that confers hypovirulence to a plant pathogenic fungus

(2010) X. Yu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

A Novel Bipartite Double-Stranded RNA Mycovirus from the White Root Rot Fungus Rosellinia necatrix: Molecular and Biological Characterization, Taxonomic Considerations, and Potential for Biological Control

(2009) S. Chiba et al.   JOURNAL OF VIROLOGY