Dynamics of Vaginal and Rectal Microbiota Over Several Menstrual Cycles in Female Cynomolgus Macaques

The implausible “in vivo” role of hydrogen peroxide as an antimicrobial factor produced by vaginal microbiota

(2018) Gilda Tachedjian et al.   Microbiome

Establishment of a Macaca fascicularis gut microbiome gene catalog and comparison with the human, pig, and mouse gut microbiomes

(2018) Xiaoping Li et al.   GigaScience

Lactobacillus -Deficient Cervicovaginal Bacterial Communities Are Associated with Increased HIV Acquisition in Young South African Women

(2017) Christina Gosmann et al.   IMMUNITY

The Female Genital Tract Microbiome Is Associated With Vaginal Antiretroviral Drug Concentrations in Human Immunodeficiency Virus–Infected Women on Antiretroviral Therapy

(2017) Renee Donahue Carlson et al.   JOURNAL OF INFECTIOUS DISEASES

Vaginal bacteria modify HIV tenofovir microbicide efficacy in African women

(2017) Nichole R. Klatt et al.   SCIENCE

Development of a Lethal Intranasal Exposure Model of Ebola Virus in the Cynomolgus Macaque

(2017) Kendra Alfson et al.   Viruses-Basel

An aerosol challenge model of tuberculosis in Mauritian cynomolgus macaques

(2017) S. A. Sharpe et al.   PLoS One

In vitro rescue of genital strains of Chlamydia trachomatis from interferon-γ and tryptophan depletion with indole-positive, but not indole-negative Prevotella spp.

(2016) Noa Ziklo et al.   BMC MICROBIOLOGY

Enhancement of Microbiota in Healthy Macaques Results in Beneficial Modulation of Mucosal and Systemic Immune Function

(2016) Jennifer A. Manuzak et al.   JOURNAL OF IMMUNOLOGY

Le microbiote intestinal : description, rôle et implication physiopathologique

(2016) C. Landman et al.   REVUE DE MEDECINE INTERNE

Lactobacilli Dominance and Vaginal pH: Why Is the Human Vaginal Microbiome Unique?

(2016) Elizabeth A. Miller et al.   Frontiers in Microbiology

Unique Insights in the Cervicovaginal Lactobacillus iners and L. crispatus Proteomes and Their Associations with Microbiota Dysbiosis

(2016) Hanneke Borgdorff et al.   PLoS One

Glycogen Levels in Undiluted Genital Fluid and Their Relationship to Vaginal pH, Estrogen, and Progesterone

(2016) Paria Mirmonsef et al.   PLoS One

Sexual networks, HIV, race and bacterial vaginosis

(2015) Chris Kenyon et al.   AIDS

Cervicovaginal Bacteria Are a Major Modulator of Host Inflammatory Responses in the Female Genital Tract

(2015) Melis N. Anahtar et al.   IMMUNITY

Cervicovaginal microbiome dysbiosis is associated with proteome changes related to alterations of the cervicovaginal mucosal barrier

(2015) H Borgdorff et al.   Mucosal Immunology

A critical analysis of the cynomolgus macaque, Macaca fascicularis, as a model to test HIV-1/SIV vaccine efficacy

(2015) Joseph M. Antony et al.   VACCINE

Luminal Conversion and Immunoregulation by Probiotics

(2015) Bhanu Priya Ganesh et al.   Frontiers in Pharmacology

Individualized medicine and the microbiome in reproductive tract

(2015) Andrea G. Braundmeier et al.   Frontiers in Physiology

Influence of Common Mucosal Co-Factors on HIV Infection in the Female Genital Tract

(2014) Victor H. Ferreira et al.   AMERICAN JOURNAL OF REPRODUCTIVE IMMUNOLOGY

Free Glycogen in Vaginal Fluids Is Associated with Lactobacillus Colonization and Low Vaginal pH

(2014) Paria Mirmonsef et al.   PLoS One

Inhibition of infection and transmission of HIV-1 and lack of significant impact on the vaginal commensal lactobacilli by carbohydrate-binding agents

(2013) M. I. Petrova et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Effects of Probiotics on the Recurrence of Bacterial Vaginosis

(2013) Aziz Homayouni et al.   Journal of Lower Genital Tract Disease

Differential abundance analysis for microbial marker-gene surveys

(2013) Joseph N Paulson et al.   NATURE METHODS

BLAST: a more efficient report with usability improvements

(2013) Grzegorz M. Boratyn et al.   NUCLEIC ACIDS RESEARCH

Differential Response of the Cynomolgus Macaque Gut Microbiota to Shigella Infection

(2013) Anna M. Seekatz et al.   PLoS One

Dysbiosis of the Gut Microbiota Is Associated with HIV Disease Progression and Tryptophan Catabolism

(2013) Ivan Vujkovic-Cvijin et al.   Science Translational Medicine

Longitudinal Assessment of Pigtailed Macaque Lower Genital Tract Microbiota by Pyrosequencing Reveals Dissimilarity to the Genital Microbiota of Healthy Humans

(2012) Gregory T. Spear et al.   AIDS RESEARCH AND HUMAN RETROVIRUSES

Vaginal Microbiome: Rethinking Health and Disease

(2012) Bing Ma et al.   Annual Review of Microbiology

The Impact of the Gut Microbiota on Human Health: An Integrative View

(2012) Jose C. Clemente et al.   CELL

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

Temporal Dynamics of the Human Vaginal Microbiota

(2012) P. Gajer et al.   Science Translational Medicine

A Comparison of Lower Genital Tract Glycogen and Lactic Acid Levels in Women and Macaques: Implications for HIV and SIV Susceptibility

(2011) Paria Mirmonsef et al.   AIDS RESEARCH AND HUMAN RETROVIRUSES

Improving the efficiency of multidimensional scaling in the analysis of high-dimensional data using singular value decomposition

(2011) C. Becavin et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes

(2011) G. D. Wu et al.   SCIENCE

Identification of Rhesus Macaque Genital Microbiota by 16S Pyrosequencing Shows Similarities to Human Bacterial Vaginosis: Implications for Use as an Animal Model for HIV Vaginal Infection

(2010) Gregory T. Spear et al.   AIDS RESEARCH AND HUMAN RETROVIRUSES

Pyrosequencing of the Genital Microbiotas of HIV-Seropositive and -Seronegative Women RevealsLactobacillus inersas the PredominantLactobacillusSpecies

(2010) Gregory T. Spear et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

The Sequence Read Archive

(2010) R. Leinonen et al.   NUCLEIC ACIDS RESEARCH

Vaginal microbiome of reproductive-age women

(2010) J. Ravel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

A Chinese rhesus macaque (Macaca mulatta) model for vaginalLactobacilluscolonization and live microbicide development

(2009) Rosa R. Yu et al.   JOURNAL OF MEDICAL PRIMATOLOGY

Physiology and Endocrinology of the Ovarian Cycle in Macaques

(2009) Gerhard F. Weinbauer et al.   TOXICOLOGIC PATHOLOGY

Critical Loss of the Balance between Th17 and T Regulatory Cell Populations in Pathogenic SIV Infection

(2009) David Favre et al.   PLoS Pathogens

High-throughput diversity and functionality analysis of the gastrointestinal tract microbiota

(2008) E G Zoetendal et al.   GUT