The untapped potential of medaka and its wild relatives

Mapping gene regulatory networks from single-cell omics data

(2018) Mark W E J Fiers et al.   Briefings in Functional Genomics

A New Riverine Ricefish of the Genus Oryzias (Beloniformes, Adrianichthyidae) from Malili, Central Sulawesi, Indonesia

(2018) Ixchel F. Mandagi et al.   COPEIA

Natural hybridization between two Japanese medaka species (Oryzias latipes and Oryzias sakaizumii) observed in the Yura River basin, Kyoto, Japan

(2018) Yuka Iguchi et al.   ICHTHYOLOGICAL RESEARCH

Identifying cell populations with scRNASeq

(2018) Tallulah S. Andrews et al.   MOLECULAR ASPECTS OF MEDICINE

The genome of the marine medaka Oryzias melastigma

(2018) Hui-Su Kim et al.   Molecular Ecology Resources

Phylogenomics reveals habitat-associated body shape divergence in Oryzias woworae species group (Teleostei: Adrianichthyidae)

(2018) Daniel F. Mokodongan et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Nanopore sequencing and assembly of a human genome with ultra-long reads

(2018) Miten Jain et al.   NATURE BIOTECHNOLOGY

A conserved Shh cis-regulatory module highlights a common developmental origin of unpaired and paired fins

(2018) Joaquín Letelier et al.   NATURE GENETICS

Accurate detection of complex structural variations using single-molecule sequencing

(2018) Fritz J. Sedlazeck et al.   NATURE METHODS

Comprehensive phylogeny of ray-finned fishes (Actinopterygii) based on transcriptomic and genomic data

(2018) Lily C. Hughes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hyperosmotic tolerance of adult fish and early embryos are determined by discrete, single loci in the genus Oryzias

(2018) Taijun Myosho et al.   Scientific Reports

Highly efficient generation of knock-in transgenic medaka by CRISPR/Cas9-mediated genome engineering

(2018) Ikuko Watakabe et al.   Zoological Letters

Efficient single-copy HDR by 5’ modified long dsDNA donors

(2018) Jose Arturo Gutierrez-Triana et al.   eLife

Medaka Population Genome Structure and Demographic History Described via Genotyping-by-Sequencing

(2018) Takafumi Katsumura et al.   G3-Genes Genomes Genetics

Fast and accurate de novo genome assembly from long uncorrected reads

(2017) Robert Vaser et al.   GENOME RESEARCH

Detecting DNA cytosine methylation using nanopore sequencing

(2017) Jared T Simpson et al.   NATURE METHODS

An efficient system for homology-dependent targeted gene integration in medaka (Oryzias latipes)

(2017) Yu Murakami et al.   Zoological Letters

Evolution of the sex-determining gene in the teleostean genus Oryzias

(2016) Masaru Matsuda et al.   GENERAL AND COMPARATIVE ENDOCRINOLOGY

Empirical evidence for competition-driven semelparity in wild medaka

(2016) Eric Edeline et al.   POPULATION ECOLOGY

Origin of Boundary Populations in Medaka (Oryzias latipesSpecies Complex)

(2016) Yusuke Takehana et al.   ZOOLOGICAL SCIENCE

Salt secretion is linked to acid-base regulation of ionocytes in seawater-acclimated medaka: new insights into the salt-secreting mechanism

(2016) Sian-Tai Liu et al.   Scientific Reports

Past seawater experience enhances seawater adaptability in medaka, Oryzias latipes

(2016) Hiroshi Miyanishi et al.   Zoological Letters

Novelty and Innovation in the History of Life

(2015) Douglas H. Erwin   CURRENT BIOLOGY

The Genomic and Genetic Toolbox of the Teleost Medaka ( Oryzias latipes )

(2015) Stephan Kirchmaier et al.   GENETICS

Variation in male courtship activeness between latitudinal populations of Northern medaka

(2015) Takeshi Sasaki et al.   ICHTHYOLOGICAL RESEARCH

Origin and intra-island diversification of Sulawesi endemic Adrianichthyidae

(2015) Daniel F. Mokodongan et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Turnover of Sex Chromosomes in Celebensis Group Medaka Fishes

(2015) Taijun Myosho et al.   G3-Genes Genomes Genetics

Advancing biology through a deeper understanding of zebrafish ecology and evolution

(2015) David M Parichy   eLife

New opportunities at the wild frontier

(2015) Jane Alfred et al.   eLife

The Genomic and Genetic Toolbox of the Teleost Medaka ( Oryzias latipes )

(2015) Stephan Kirchmaier et al.   GENETICS

Genetic similarity of the Hainan medaka populations collected from hyper- and hypo-osmotic environments in northern Vietnam

(2015) Hideki Hayakawa et al.   Ocean Science Journal

Variation in the ontogeny of sex steroid levels between latitudinal populations of the medaka

(2015) Maiko Kawajiri et al.   Zoological Letters

Effect of environmental salinity on expression of adrenomedullin genes suggests osmoregulatory activity in the medaka, Oryzias latipes

(2015) Maho Ogoshi et al.   Zoological Letters

A New Ricefish of the GenusOryzias(Beloniformes, Adrianichthyidae) from Lake Tiu, Central Sulawesi, Indonesia

(2014) Daniel F. Mokodongan et al.   COPEIA

Genetics of Sexual Development: An Evolutionary Playground for Fish

(2014) C. Heule et al.   GENETICS

A new model army: Emerging fish models to study the genomics of vertebrate Evo-Devo

(2014) Ingo Braasch et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

Natural allelic variations of xenobiotic-metabolizing enzymes affect sexual dimorphism in Oryzias latipes

(2014) T. Katsumura et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Comparison of Aggressive Behaviors Between Two Wild Populations of Japanese Medaka,Oryzias latipesandO. sakaizumii

(2014) Nao Kagawa   ZOOLOGICAL SCIENCE

Co-option of Sox3 as the male-determining factor on the Y chromosome in the fish Oryzias dancena

(2014) Yusuke Takehana et al.   Nature Communications

Genomic and Phenotypic Characterization of a Wild Medaka Population: Towards the Establishment of an Isogenic Population Genetic Resource in Fish

(2014) Mikhail Spivakov et al.   G3-Genes Genomes Genetics

Development of a Promising Fish Model (Oryzias melastigma) for Assessing Multiple Responses to Stresses in the Marine Environment

(2014) Sijun Dong et al.   Biomed Research International

Two New Ricefishes of the GenusOryzias(Atherinomorpha: Beloniformes: Adrianichthyidae) Augment the Endemic Freshwater Fish Fauna of Southeastern Sulawesi, Indonesia

(2013) Lynne R. Parenti et al.   COPEIA

The acute and regulatory phases of time-course changes in gill mitochondrion-rich cells of seawater-acclimated medaka (Oryzias dancena) when exposed to hypoosmotic environments

(2012) Chao-Kai Kang et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Tracing the Emergence of a Novel Sex-Determining Gene in Medaka, Oryzias luzonensis

(2012) T. Myosho et al.   GENETICS

Allelic Expression Changes in Medaka (Oryzias latipes) Hybrids between Inbred Strains Derived from Genetically Distant Populations

(2012) Yasuhiko Murata et al.   PLoS One

Life-History Characteristics of Japanese Medaka Oryzias latipes

(2011) Robert T Leaf et al.   COPEIA

Molecular staging of marine medaka: A model organism for marine ecotoxicity study

(2011) Xueping Chen et al.   MARINE POLLUTION BULLETIN

The Art of Medaka Genetics and Genomics: What Makes Them So Unique?

(2010) Hiroyuki Takeda et al.   Annual Review of Genetics

Reversible whole-organism cell cycle arrest in a living vertebrate

(2010) Oltea Sampetrean et al.   CELL CYCLE

A New, Remarkably Colorful, Small Ricefish of the Genus Oryzias (Beloniformes, Adrianichthyidae) from Sulawesi, Indonesia

(2010) Lynne R. Parenti et al.   COPEIA

Evolutionary novelties

(2010) Günter P. Wagner et al.   CURRENT BIOLOGY

RNA-Seq analysis to capture the transcriptome landscape of a single cell

(2010) Fuchou Tang et al.   Nature Protocols

A phylogenetic analysis and taxonomic revision of ricefishes, Oryzias and relatives (Beloniformes, Adrianichthyidae)

(2010) LYNNE R. PARENTI   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Transcriptional Rewiring of the Sex Determining dmrt1 Gene Duplicate by Transposable Elements

(2010) Amaury Herpin et al.   PLoS Genetics

Heterochronic differences in fin development between latitudinal populations of the medaka Oryzias latipes (Actinopterygii: Adrianichthyidae)

(2009) MAIKO KAWAJIRI et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Divergence time of the two regional medaka populations in Japan as a new time scale for comparative genomics of vertebrates

(2009) D. H. E. Setiamarga et al.   Biology Letters

An acquisition trade-off with fast growth in a fish, the medaka Oryzias latipes: why do low-latitude ectotherms grow more slowly?

(2009) Yuya Suzuki et al.   EVOLUTIONARY ECOLOGY

Deep homology and the origins of evolutionary novelty

(2009) Neil Shubin et al.   NATURE

Sex Determination and Sex Chromosome Evolution: Insights from Medaka

(2009) M. Kondo et al.   Sexual Development

Differential expression of branchial Na+/K+-ATPase of two medaka species, Oryzias latipes and Oryzias dancena, with different salinity tolerances acclimated to fresh water, brackish water and seawater

(2008) Chao-Kai Kang et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Java medaka: A proposed new marine test fish for ecotoxicology

(2008) Jiro Koyama et al.   ENVIRONMENTAL TOXICOLOGY

Reproductive role of attaching filaments on the egg envelope inXenopoecilus sarasinorum (Adrianichthidae, teleostei)

(2008) Takashi Iwamatsu et al.   JOURNAL OF MORPHOLOGY

Real-Time DNA Sequencing from Single Polymerase Molecules

(2008) J. Eid et al.   SCIENCE