Analyzing and Characterizing the Chloroplast Genome of Salix wilsonii

ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees

(2018) Chao Zhang et al.   BMC BIOINFORMATICS

Complete Chloroplast Genome of Cercis chuniana (Fabaceae) with Structural and Genetic Comparison to Six Species in Caesalpinioideae

(2018) Wanzhen Liu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The complete chloroplast genome sequence of Actinidia arguta using the PacBio RS II platform

(2018) Miaomiao Lin et al.   PLoS One

Chloroplast genomes of Byrsonima species (Malpighiaceae): comparative analysis and screening of high divergence sequences

(2018) Alison P. A. Menezes et al.   Scientific Reports

Plastome phylogeny and lineage diversification of Salicaceae with focus on poplars and willows

(2018) Lei Zhang et al.   Ecology and Evolution

Reconfiguration of the plastid genome in Lamprocapnos spectabilis: IR boundary shifting, inversion, and intraspecific variation

(2018) Seongjun Park et al.   Scientific Reports

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

Phylogenomic Analysis and Dynamic Evolution of Chloroplast Genomes in Salicaceae

(2017) Yuan Huang et al.   Frontiers in Plant Science

Analysis and characterization of the Salix suchowensis chloroplast genome

(2017) Congrui Sun et al.   JOURNAL OF FORESTRY RESEARCH

The complete chloroplast genome sequence of Aconitum coreanum and Aconitum carmichaelii and comparative analysis with other Aconitum species

(2017) Inkyu Park et al.   PLoS One

The complete chloroplast genome of Gentiana straminea (Gentianaceae), an endemic species to the Sino-Himalayan subregion

(2016) Lianghong Ni et al.   GENE

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenomic and structural analyses of 18 complete plastomes across nearly all families of early-diverging eudicots, including an angiosperm-wide analysis of IR gene content evolution

(2016) Yanxia Sun et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The Complete Chloroplast Genome Sequence of the Medicinal Plant Swertia mussotii Using the PacBio RS II Platform

(2016) Beibei Xiang et al.   MOLECULES

SMRT sequencing only de novo assembly of the sugar beet (Beta vulgaris) chloroplast genome

(2015) Kai Bernd Stadermann et al.   BMC BIOINFORMATICS

Phylogeny of Salix subgenus Salix s.l. (Salicaceae): delimitation, biogeography, and reticulate evolution

(2015) Jie Wu et al.   BMC EVOLUTIONARY BIOLOGY

Evolutionary dynamics of the plastid inverted repeat: the effects of expansion, contraction, and loss on substitution rates

(2015) Andan Zhu et al.   NEW PHYTOLOGIST

A Comparative Analysis of Whole Plastid Genomes from the Apiales: Expansion and Contraction of the Inverted Repeat, Mitochondrial to Plastid Transfer of DNA, and Identification of Highly Divergent Noncoding Regions

(2015) Stephen R. Downie et al.   SYSTEMATIC BOTANY

Chloroplast genome of Aconitum barbatum var. puberulum (Ranunculaceae) derived from CCS reads using the PacBio RS platform

(2015) Xiaochen Chen et al.   Frontiers in Plant Science

Phylogenetic Relationships of American Willows (Salix L., Salicaceae)

(2015) Aurélien Lauron-Moreau et al.   PLoS One

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Complete Chloroplast Genome Sequence of Omani Lime (Citrus aurantiifolia) and Comparative Analysis within the Rosids

(2014) Huei-Jiun Su et al.   PLoS One

Phylogenetic relationships of Salix L. subg. Salix species (Salicaceae) according to sequencing data of intergenic spacers of the chloroplast genome and ITS rDNA

(2014) V. Yu. Barkalov et al.   RUSSIAN JOURNAL OF GENETICS

An evaluation of the PacBio RS platform for sequencing and de novo assembly of a chloroplast genome

(2013) Marco Ferrarini et al.   BMC GENOMICS

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

A recurring syndrome of accelerated plastid genome evolution in the angiosperm tribe Sileneae (Caryophyllaceae)

(2013) Daniel B. Sloan et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Comparative analysis of codon usage patterns in chloroplast genomes of the Asteraceae family

(2013) Xiaojun Nie et al.   PLANT MOLECULAR BIOLOGY REPORTER

Complete Sequencing of Five Araliaceae Chloroplast Genomes and the Phylogenetic Implications

(2013) Rong Li et al.   PLoS One

The evolution of the plastid chromosome in land plants: gene content, gene order, gene function

(2011) Susann Wicke et al.   PLANT MOLECULAR BIOLOGY

Genetic Improvement of Willow for Bioenergy and BiofuelsFree Access

(2010) Angela Karp et al.   Journal of Integrative Plant Biology

Recombination and the maintenance of plant organelle genome stability

(2010) Alexandre Maréchal et al.   NEW PHYTOLOGIST

Chloroplast simple sequence repeats (cpSSRs): technical resources and recommendations for expanding cpSSR discovery and applications to a wide array of plant species

(2009) DANIEL EBERT et al.   Molecular Ecology Resources

Complete plastid genome sequence of the chickpea (Cicer arietinum) and the phylogenetic distribution of rps12 and clpP intron losses among legumes (Leguminosae)

(2008) Robert K. Jansen et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The complete nucleotide sequence of the cassava (Manihot esculenta) chloroplast genome and the evolution of atpF in Malpighiales: RNA editing and multiple losses of a group II intron

(2008) Henry Daniell et al.   THEORETICAL AND APPLIED GENETICS

Functional Gene Losses Occur with Minimal Size Reduction in the Plastid Genome of the Parasitic Liverwort Aneura mirabilis

(2007) N. J. Wickett et al.   MOLECULAR BIOLOGY AND EVOLUTION