The impact of DNA methylation on the cancer proteome

Machine Learning Identifies Stemness Features Associated with Oncogenic Dedifferentiation

(2018) Tathiane M. Malta et al.   CELL

Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas

(2018) Joshua D. Campbell et al.   Cell Reports

Module Analysis Captures Pancancer Genetically and Epigenetically Deregulated Cancer Driver Genes for Smoking and Antiviral Response

(2018) Magali Champion et al.   EBioMedicine

VEN-120, a Recombinant Human Lactoferrin, Promotes a Regulatory T Cell [Treg] Phenotype and Drives Resolution of Inflammation in Distinct Murine Models of Inflammatory Bowel Disease

(2017) Christopher F MacManus et al.   Journal of Crohns & Colitis

Downregulation of Calcium-Binding Protein S100A9 Inhibits Hypopharyngeal Cancer Cell Proliferation and Invasion Ability Through Inactivation of NF-κB Signaling

(2017) Ping Wu et al.   ONCOLOGY RESEARCH

Systematic Analysis of the Expression of the Mitochondrial ATP Synthase (Complex V) Subunits in Clear Cell Renal Cell Carcinoma

(2017) Maria Brüggemann et al.   Translational Oncology

Molecular-Based Recursive Partitioning Analysis Model for Glioblastoma in the Temozolomide Era

(2017) Erica Hlavin Bell et al.   JAMA Oncology

Identification of an atypical etiological head and neck squamous carcinoma subtype featuring the CpG island methylator phenotype

(2017) K. Brennan et al.   EBioMedicine

NSD1 inactivation defines an immune cold, DNA hypomethylated subtype in squamous cell carcinoma

(2017) Kevin Brennan et al.   Scientific Reports

Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer

(2016) Hui Zhang et al.   CELL

A Description of the Clinical Proteomic Tumor Analysis Consortium (CPTAC) Common Data Analysis Pipeline

(2016) Paul A. Rudnick et al.   JOURNAL OF PROTEOME RESEARCH

Proteogenomics connects somatic mutations to signalling in breast cancer

(2016) Philipp Mertins et al.   NATURE

Proteins that interact with calgranulin B in the human colon cancer cell line HCT-116

(2016) Jae Kyung Myung et al.   Oncotarget

Cross-tissue Analysis of Gene and Protein Expression in Normal and Cancer Tissues

(2016) Idit Kosti et al.   Scientific Reports

TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data

(2015) Antonio Colaprico et al.   NUCLEIC ACIDS RESEARCH

Preserving biological heterogeneity with a permuted surrogate variable analysis for genomics batch correction

(2014) Hilary S. Parker et al.   BIOINFORMATICS

Characterizing DNA methylation alterations from The Cancer Genome Atlas

(2014) Daniel J. Weisenberger   JOURNAL OF CLINICAL INVESTIGATION

Proteogenomic characterization of human colon and rectal cancer

(2014) Bing Zhang et al.   NATURE

Critical limitations of consensus clustering in class discovery

(2014) Yasin Șenbabaoğlu et al.   Scientific Reports

Large-scale gene function analysis with the PANTHER classification system

(2013) Huaiyu Mi et al.   Nature Protocols

Comparative Analysis of Different Label-Free Mass Spectrometry Based Protein Abundance Estimates and Their Correlation with RNA-Seq Gene Expression Data

(2012) Kang Ning et al.   JOURNAL OF PROTEOME RESEARCH

Comprehensive molecular characterization of human colon and rectal cancer

(2012)   NATURE

Comprehensive molecular portraits of human breast tumours

(2012) Daniel C. Koboldt et al.   NATURE

Functions of DNA methylation: islands, start sites, gene bodies and beyond

(2012) Peter A. Jones   NATURE REVIEWS GENETICS

A DNA methylation fingerprint of 1628 human samples

(2011) A. F. Fernandez et al.   GENOME RESEARCH

Integrated genomic analyses of ovarian carcinoma

(2011) D. Bell et al.   NATURE

ConsensusClusterPlus: a class discovery tool with confidence assessments and item tracking

(2010) Matthew D. Wilkerson et al.   BIOINFORMATICS

Recombination Activator Function of the Novel RAD51- and RAD51B-binding Protein, Human EVL

(2009) Motoki Takaku et al.   JOURNAL OF BIOLOGICAL CHEMISTRY