The sponge microbiome within the greater coral reef microbial metacommunity

Bacterial Communities Inhabiting the Sponge Biemna fortis, Sediment and Water in Marine Lakes and the Open Sea

(2018) Daniel F. R. Cleary et al.   MICROBIAL ECOLOGY

Rates of gut microbiome divergence in mammals

(2018) Alex H. Nishida et al.   MOLECULAR ECOLOGY

Compositional analysis of archaeal communities in high and low microbial abundance sponges in the Misool coral reef system, Indonesia

(2018) Ana Rita Moura Polónia et al.   Marine Biology Research

Archaeal and bacterial communities of Xestospongia testudinaria and sediment differ in diversity, composition and predicted function in an Indonesian coral reef environment

(2017) Ana Rita Moura Polónia et al.   JOURNAL OF SEA RESEARCH

Sponge Prokaryote Communities in Taiwanese Coral Reef and Shallow Hydrothermal Vent Ecosystems

(2017) F. J. R. C. Coelho et al.   MICROBIAL ECOLOGY

Unraveling the processes shaping mammalian gut microbiomes over evolutionary time

(2017) Mathieu Groussin et al.   Nature Communications

Broadcast Spawning Coral Mussismilia hispida Can Vertically Transfer its Associated Bacterial Core

(2017) Deborah C. A. Leite et al.   Frontiers in Microbiology

Predicting the HMA-LMA Status in Marine Sponges by Machine Learning

(2017) Lucas Moitinho-Silva et al.   Frontiers in Microbiology

Compositional analysis of bacterial communities in seawater, sediment, and sponges in the Misool coral reef system, Indonesia

(2017) Daniel Francis Richard Cleary et al.   Marine Biodiversity

The Sponge Hologenome

(2016) Nicole S. Webster et al.   mBio

Diversity, structure and convergent evolution of the global sponge microbiome

(2016) Torsten Thomas et al.   Nature Communications

The HMA-LMA Dichotomy Revisited: an Electron Microscopical Survey of 56 Sponge Species

(2016) Volker Gloeckner et al.   BIOLOGICAL BULLETIN

Composition and predicted functional ecology of mussel-associated bacteria in Indonesian marine lakes

(2015) Daniel F. R. Cleary et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Microbial Diversity and Putative Diazotrophy in High- and Low-Microbial-Abundance Mediterranean Sponges

(2015) Marta Ribes et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Diet Dominates Host Genotype in Shaping the Murine Gut Microbiota

(2015) Rachel N. Carmody et al.   Cell Host & Microbe

Similar sponge-associated bacteria can be acquired via both vertical and horizontal transmission

(2015) Detmer Sipkema et al.   ENVIRONMENTAL MICROBIOLOGY

Biodiversity pattern of subtidal sponges (Porifera: Demospongiae) in the Penghu Archipelago (Pescadores), Taiwan

(2015) Yusheng M. Huang et al.   JOURNAL OF THE MARINE BIOLOGICAL ASSOCIATION OF THE UNITED KINGDOM

Composition and Predictive Functional Analysis of Bacterial Communities in Seawater, Sediment and Sponges in the Spermonde Archipelago, Indonesia

(2015) Daniel F. R. Cleary et al.   MICROBIAL ECOLOGY

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Habitat and water quality variables as predictors of community composition in an Indonesian coral reef: a multi-taxon study in the Spermonde Archipelago

(2015) Ana Rita Moura Polónia et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Strategies for Achieving High Sequencing Accuracy for Low Diversity Samples and Avoiding Sample Bleeding Using Illumina Platform

(2015) Abhishek Mitra et al.   PLoS One

Symbiosis as a General Principle in Eukaryotic Evolution

(2014) A. E. Douglas   Cold Spring Harbor Perspectives in Biology

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Evidence for a persistent microbial seed bank throughout the global ocean

(2013) S. M. Gibbons et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Environmental conditions and community evenness determine the outcome of biological invasion

(2013) Karen De Roy et al.   Nature Communications

Bacterial community profiles in low microbial abundance sponges

(2012) Emily C. Giles et al.   FEMS MICROBIOLOGY ECOLOGY

Dispersal of thermophilic Desulfotomaculum endospores into Baltic Sea sediments over thousands of years

(2012) Júlia Rosa de Rezende et al.   ISME Journal

Genomic insights into the marine sponge microbiome

(2012) Ute Hentschel et al.   NATURE REVIEWS MICROBIOLOGY

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Chloroflexi bacteria are more diverse, abundant, and similar in high than in low microbial abundance sponges

(2011) Susanne Schmitt et al.   FEMS MICROBIOLOGY ECOLOGY

Differential feeding strategies in phyllidiid nudibranchs on coral reefs at Halmahera, northern Moluccas

(2010) J. van Alphen et al.   CORAL REEFS

Pyrosequencing reveals highly diverse and species-specific microbial communities in sponges from the Red Sea

(2010) On On Lee et al.   ISME Journal

Activity profiles for marine sponge-associated bacteria obtained by 16S rRNA vs 16S rRNA gene comparisons

(2010) Janine Kamke et al.   ISME Journal

Morphology and evolutionary ecology of a sponge-barnacle symbiosis: Four new genera of barnacles (Archaeobalanidae, Bryozobiinae)

(2010) Robert J. Van Syoc et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Hydrography shapes bacterial biogeography of the deep Arctic Ocean

(2009) Pierre E Galand et al.   ISME Journal

Molecular Microbial Diversity Survey of Sponge Reproductive Stages and Mechanistic Insights into Vertical Transmission of Microbial Symbionts

(2008) S. Schmitt et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY