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Atypical Teratoid/Rhabdoid Tumors Are Comprised of Three Epigenetic Subgroups with Distinct Enhancer Landscapes

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Whole-genome analysis of the methylome and hydroxymethylome in normal and malignant lung and liver

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Breast cancer genome and transcriptome integration implicates specific mutational signatures with immune cell infiltration

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Differential DNA mismatch repair underlies mutation rate variation across the human genome

(2015) Fran Supek et al.   NATURE

Human body epigenome maps reveal noncanonical DNA methylation variation

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Cell-of-origin chromatin organization shapes the mutational landscape of cancer

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Whole-genome fingerprint of the DNA methylome during human B cell differentiation

(2015) Marta Kulis et al.   NATURE GENETICS

DNA methylome analysis in Burkitt and follicular lymphomas identifies differentially methylated regions linked to somatic mutation and transcriptional control

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A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping

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Decoding the regulatory landscape of medulloblastoma using DNA methylation sequencing

(2014) Volker Hovestadt et al.   NATURE

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Global Epigenomic Reconfiguration During Mammalian Brain Development

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Gene Density, Transcription, and Insulators Contribute to the Partition of the Drosophila Genome into Physical Domains

(2012) Chunhui Hou et al.   MOLECULAR CELL

Chromatin organization is a major influence on regional mutation rates in human cancer cells

(2012) Benjamin Schuster-Böckler et al.   NATURE

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(2012) Daniel C. Koboldt et al.   NATURE

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(2012) Jesse R. Dixon et al.   NATURE

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Large-scale methylation domains mark a functional subset of neuronally expressed genes

(2011) D. I. Schroeder et al.   GENOME RESEARCH

Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells

(2011) Ryan Lister et al.   NATURE

Increased methylation variation in epigenetic domains across cancer types

(2011) Kasper Daniel Hansen et al.   NATURE GENETICS

Regions of focal DNA hypermethylation and long-range hypomethylation in colorectal cancer coincide with nuclear lamina–associated domains

(2011) Benjamin P Berman et al.   NATURE GENETICS

Breast Cancer Methylomes Establish an Epigenomic Foundation for Metastasis

(2011) F. Fang et al.   Science Translational Medicine

Identification of a CpG Island Methylator Phenotype that Defines a Distinct Subgroup of Glioma

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Human DNA methylomes at base resolution show widespread epigenomic differences

(2009) Ryan Lister et al.   NATURE

Sequencing newly replicated DNA reveals widespread plasticity in human replication timing

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Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome

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Subtypes of Breast Cancer Show Preferential Site of Relapse

(2008) M. Smid et al.   CANCER RESEARCH

Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions

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