Ontology-based metabolomics data integration with quality control

Compliance with minimum information guidelines in public metabolomics repositories

(2017) Rachel A. Spicer et al.   Scientific Data

Metabolite Profiles of Diabetes Incidence and Intervention Response in the Diabetes Prevention Program

(2016) Geoffrey A. Walford et al.   DIABETES

Metabolomics in Prediabetes and Diabetes: A Systematic Review and Meta-analysis

(2016) Marta Guasch-Ferré et al.   DIABETES CARE

Meta‐analysis of clinical metabolic profiling studies in cancer: challenges and opportunities

(2016) Jermaine Goveia et al.   EMBO Molecular Medicine

Advantages and Pitfalls of Mass Spectrometry Based Metabolome Profiling in Systems Biology

(2016) Ina Aretz et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Impact of Long-Term Poor and Good Glycemic Control on Metabolomics Alterations in Type 1 Diabetic People

(2016) Tumpa Dutta et al.   JOURNAL OF CLINICAL ENDOCRINOLOGY & METABOLISM

The Ontology for Biomedical Investigations

(2016) Anita Bandrowski et al.   PLoS One

Effects of pre-analytical processes on blood samples used in metabolomics studies

(2015) Peiyuan Yin et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Non-target screening with high-resolution mass spectrometry: critical review using a collaborative trial on water analysis

(2015) Emma L. Schymanski et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access

(2015) Reza M. Salek et al.   Metabolomics

Identifying Small Molecules via High Resolution Mass Spectrometry: Communicating Confidence

(2014) Emma L. Schymanski et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Proposed quantitative and alphanumeric metabolite identification metrics

(2014) Lloyd W. Sumner et al.   Metabolomics

Can we trust untargeted metabolomics? Results of the metabo-ring initiative, a large-scale, multi-instrument inter-laboratory study

(2014) Jean-Charles Martin et al.   Metabolomics

Metabolite identification: are you sure? And how do your peers gauge your confidence?

(2014) Darren J. Creek et al.   Metabolomics

Direct infusion mass spectrometry metabolomics dataset: a benchmark for data processing and quality control

(2014) Jennifer A Kirwan et al.   Scientific Data

The role of reporting standards for metabolite annotation and identification in metabolomic studies

(2013) Reza M Salek et al.   GigaScience

Meta-analysis of untargeted metabolomic data from multiple profiling experiments

(2012) Gary J Patti et al.   Nature Protocols

MetaboLights—an open-access general-purpose repository for metabolomics studies and associated meta-data

(2012) Kenneth Haug et al.   NUCLEIC ACIDS RESEARCH

The importance of experimental design and QC samples in large-scale and MS-driven untargeted metabolomic studies of humans

(2012) Warwick B Dunn et al.   Bioanalysis

LC-MS-based metabolomics

(2011) Bin Zhou et al.   Molecular BioSystems

Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry

(2011) Warwick B Dunn et al.   Nature Protocols

BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications

(2011) P. L. Whetzel et al.   NUCLEIC ACIDS RESEARCH

Data-processing strategies for metabolomics studies

(2011) Margriet M.W.B. Hendriks et al.   TRAC-TRENDS IN ANALYTICAL CHEMISTRY

ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level

(2010) P. Rocca-Serra et al.   BIOINFORMATICS

The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services

(2010) Martijn P van Iersel et al.   BMC BIOINFORMATICS