The Multispecies Coalescent Over-Splits Species in the Case of Geographically Widespread Taxa

Taxonomic and conservation implications of population genetic admixture, mito-nuclear discordance, and male-biased dispersal of a large endangered snake, Drymarchon couperi

(2019) Brian Folt et al.   PLoS One

Species Delimitation in Herpetology

(2019) David M. Hillis   JOURNAL OF HERPETOLOGY

Inferring Continuous and Discrete Population Genetic Structure Across Space

(2018) Gideon S. Bradburd et al.   GENETICS

Comparison of Methods for Molecular Species Delimitation Across a Range of Speciation Scenarios

(2018) Arong Luo et al.   SYSTEMATIC BIOLOGY

The Spectre of Too Many Species

(2018) Adam D Leaché et al.   SYSTEMATIC BIOLOGY

Inferring Continuous and Discrete Population Genetic Structure Across Space

(2018) Gideon S. Bradburd et al.   GENETICS

Multispecies coalescent delimits structure, not species

(2017) Jeet Sukumaran et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Impact of Model Violations on the Inference of Species Boundaries Under the Multispecies Coalescent

(2017) Anthony J Barley et al.   SYSTEMATIC BIOLOGY

Bayesian species delimitation in Pleophylla chafers (Coleoptera) – the importance of prior choice and morphology

(2016) Jonas Eberle et al.   BMC EVOLUTIONARY BIOLOGY

The role of selection and historical factors in driving population differentiation along an elevational gradient in an island bird

(2016) J. A. M. Bertrand et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

The influence of locus number and information content on species delimitation: an empirical test case in an endangered Mexican salamander

(2016) Paul M. Hime et al.   MOLECULAR ECOLOGY

The programstructuredoes not reliably recover the correct population structure when sampling is uneven: subsampling and new estimators alleviate the problem

(2016) Sebastien J. Puechmaille   Molecular Ecology Resources

A Return to Linnaeus’s Focus on Diagnosis, Not Description: The Use of DNA Characters in the Formal Naming of Species

(2016) Susanne S. Renner   SYSTEMATIC BIOLOGY

Integrating phylogenomic and morphological data to assess candidate species-delimitation models in brown and red-bellied snakes (Storeria)

(2016) R. Alexander Pyron et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Incongruence between mtDNA and nuclear data in the freshwater mussel genus Cyprogenia (Bivalvia: Unionidae) and its impact on species delineation

(2016) Jer Pin Chong et al.   Ecology and Evolution

Bayesian species delimitation combining multiple genes and traits in a unified framework

(2015) Claudia Solís-Lemus et al.   EVOLUTION

Strong premating reproductive isolation drives incipient speciation inMimulus aurantiacus

(2015) James M. Sobel et al.   EVOLUTION

Do Species Exist in Asexuals? Theory and Evidence from Bdelloid Rotifers

(2015) Diego Fontaneto et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Sky island diversification meets the multispecies coalescent - divergence in the spruce-fir moss spider (Microhexura montivaga,Araneae, Mygalomorphae) on the highest peaks of southern Appalachia

(2015) Marshal Hedin et al.   MOLECULAR ECOLOGY

Species are hypotheses: avoid connectivity assessments based on pillars of sand

(2015) Eric Pante et al.   MOLECULAR ECOLOGY

The Species versus Subspecies Conundrum: Quantitative Delimitation from Integrating Multiple Data Types within a Single Bayesian Approach in Hercules Beetles

(2015) Jen-Pan Huang et al.   SYSTEMATIC BIOLOGY

Unguided Species Delimitation Using DNA Sequence Data from Multiple Loci

(2014) Z. Yang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Integrative Taxonomy and Species Delimitation in Harvestmen: A Revision of the Western North American Genus Sclerobunus (Opiliones: Laniatores: Travunioidea)

(2014) Shahan Derkarabetian et al.   PLoS One

Species detection and individual assignment in species delimitation: can integrative data increase efficacy?

(2014) D. L. Edwards et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Bayesian Species Delimitation Can Be Robust to Guide-Tree Inference Errors

(2014) Chi Zhang et al.   SYSTEMATIC BIOLOGY

Species Delimitation using Genome-Wide SNP Data

(2014) Adam D. Leaché et al.   SYSTEMATIC BIOLOGY

THE CHALLENGE OF SPECIES DELIMITATION AT THE EXTREMES: DIVERSIFICATION WITHOUT MORPHOLOGICAL CHANGE IN PHILIPPINE SUN SKINKS

(2013) Anthony J. Barley et al.   EVOLUTION

How to fail at species delimitation

(2013) Bryan C. Carstens et al.   MOLECULAR ECOLOGY

hzar: hybrid zone analysis using an R software package

(2013) Elizabeth P. Derryberry et al.   Molecular Ecology Resources

Coalescent Species Delimitation in Milksnakes (Genus Lampropeltis) and Impacts on Phylogenetic Comparative Analyses

(2013) S. Ruane et al.   SYSTEMATIC BIOLOGY

Poor Fit to the Multispecies Coalescent is Widely Detectable in Empirical Data

(2013) Noah M. Reid et al.   SYSTEMATIC BIOLOGY

Upstream Analyses Create Problems with DNA-Based Species Delimitation

(2013) Melisa Olave et al.   SYSTEMATIC BIOLOGY

SPECIES DELIMITATION WITH ABC AND OTHER COALESCENT-BASED METHODS: A TEST OF ACCURACY WITH SIMULATIONS AND AN EMPIRICAL EXAMPLE WITH LIZARDS OF THE LIOLAEMUS DARWINII COMPLEX (SQUAMATA: LIOLAEMIDAE)

(2012) Arley Camargo et al.   EVOLUTION

The effects of sampling on delimiting species from multi-locus sequence data

(2012) Eric N. Rittmeyer et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Polar and brown bear genomes reveal ancient admixture and demographic footprints of past climate change

(2012) W. Miller et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Coalescent-based species delimitation in an integrative taxonomy

(2012) Matthew K. Fujita et al.   TRENDS IN ECOLOGY & EVOLUTION

Adaptive Radiation and Ecological Opportunity in Sulawesi and Philippine Fanged Frog (Limnonectes) Communities

(2011) Mohammad I. Setiadi et al.   AMERICAN NATURALIST

Structurama: Bayesian Inference of Population Structure

(2011) John P. Huelsenbeck et al.   Evolutionary Bioinformatics

Evaluation of a Bayesian Coalescent Method of Species Delimitation

(2011) Chi Zhang et al.   SYSTEMATIC BIOLOGY

The integrative future of taxonomy

(2010) Jose M. Padial et al.   Frontiers in Zoology

SpedeSTEM: a rapid and accurate method for species delimitation

(2010) DANIEL D. ENCE et al.   Molecular Ecology Resources

Bayesian species delimitation using multilocus sequence data

(2010) Z. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bayesian species delimitation in West African forest geckos (Hemidactylus fasciatus)

(2010) A. D. Leache et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Integrative Taxonomy: A Multisource Approach to Exploring Biodiversity

(2009) Birgit C. Schlick-Steiner et al.   Annual Review of Entomology

Spatial Inference of Admixture Proportions and Secondary Contact Zones

(2009) E. Durand et al.   MOLECULAR BIOLOGY AND EVOLUTION

introgress: a software package for mapping components of isolation in hybrids

(2009) ZACHARIAH GOMPERT et al.   Molecular Ecology Resources

Quantifying ecological, morphological, and genetic variation to delimit species in the coast horned lizard species complex (Phrynosoma)

(2009) A. D. Leache et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Why sampling scheme matters: the effect of sampling scheme on landscape genetic results

(2008) Michael K. Schwartz et al.   CONSERVATION GENETICS