Faecal microbiota shift during weaning transition in piglets and evaluation of AO blood types as shaping factor for the bacterial community profile

Effects of alpha-(1,2)-fucosyltransferase genotype variants on plasma metabolome, immune responses and gastrointestinal bacterial enumeration of pigs pre- and post-weaning

(2018) Ann-Sofie Riis Poulsen et al.   PLoS One

The evolution of the host microbiome as an ecosystem on a leash

(2017) Kevin R. Foster et al.   NATURE

Relationships between gastrointestinal microbiota and blood group antigens

(2017) Anuhya Gampa et al.   PHYSIOLOGICAL GENOMICS

The Maturing Development of Gut Microbiota in Commercial Piglets during the Weaning Transition

(2017) Limei Chen et al.   Frontiers in Microbiology

Characterisation of Early-Life Fecal Microbiota in Susceptible and Healthy Pigs to Post-Weaning Diarrhoea

(2017) Samir Dou et al.   PLoS One

Fatty acid composition and phospholipid types used in infant formulas modifies the establishment of human gut bacteria in germ-free mice

(2017) Rikke Guldhammer Nejrup et al.   Scientific Reports

ABO antigen and secretor statuses are not associated with gut microbiota composition in 1,500 twins

(2016) Emily R. Davenport et al.   BMC GENOMICS

Age, introduction of solid feed and weaning are more important determinants of gut bacterial succession in piglets than breed and nursing mother as revealed by a reciprocal cross-fostering model

(2016) Gaorui Bian et al.   ENVIRONMENTAL MICROBIOLOGY

The A0 blood group genotype modifies the jejunal glycomic binding pattern profile of piglets early associated with a simple or complex microbiota1

(2016) D. Priori et al.   JOURNAL OF ANIMAL SCIENCE

Characterization of porcine milk oligosaccharides during early lactation and their relation to the fecal microbiome

(2016) J. Salcedo et al.   JOURNAL OF DAIRY SCIENCE

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

The relationship between faecal-associated and mucosal-associated microbiota in irritable bowel syndrome patients and healthy subjects

(2015) I. Rangel et al.   ALIMENTARY PHARMACOLOGY & THERAPEUTICS

Power and sample-size estimation for microbiome studies using pairwise distances and PERMANOVA

(2015) Brendan J. Kelly et al.   BIOINFORMATICS

Blood Groups in Infection and Host Susceptibility

(2015) Laura Cooling   CLINICAL MICROBIOLOGY REVIEWS

Early-life establishment of the swine gut microbiome and impact on host phenotypes

(2015) Núria Mach et al.   Environmental Microbiology Reports

Diet shapes the gut microbiome of pigs during nursing and weaning

(2015) Steven A. Frese et al.   Microbiome

Fermentable non-starch polysaccharides increases the abundance of Bacteroides–Prevotella–Porphyromonas in ileal microbial community of growing pigs

(2014) E. Ivarsson et al.   Animal

Assessment of fecal bacterial diversity among healthy piglets during the weaning transition

(2014) Edward Alain B. Pajarillo et al.   JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY

Faecal Microbiota Composition in Adults Is Associated with the FUT2 Gene Determining the Secretor Status

(2014) Pirjo Wacklin et al.   PLoS One

Genetic Control of Obesity and Gut Microbiota Composition in Response to High-Fat, High-Sucrose Diet in Mice

(2013) Brian W. Parks et al.   Cell Metabolism

Richness of human gut microbiome correlates with metabolic markers

(2013) Emmanuelle Le Chatelier et al.   NATURE

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Differential abundance analysis for microbial marker-gene surveys

(2013) Joseph N Paulson et al.   NATURE METHODS

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Association between the ABO blood group and the human intestinal microbiota composition

(2012) Harri Mäkivuokko et al.   BMC MICROBIOLOGY

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

The intestinal microbiome of the pig

(2012) Richard Isaacson et al.   ANIMAL HEALTH RESEARCH REVIEWS

Molecular characterization of the human ABO blood group orthologus system in pigs

(2011) D. T. Nguyen et al.   ANIMAL GENETICS

iPath2.0: interactive pathway explorer

(2011) Takuji Yamada et al.   NUCLEIC ACIDS RESEARCH

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

What is microbial community ecology?

(2009) Allan Konopka   ISME Journal

Recognition of Blood Group ABH Type 1 Determinants by the FedF Adhesin of F18-fimbriatedEscherichia coli

(2009) Annelies Coddens et al.   JOURNAL OF BIOLOGICAL CHEMISTRY