Characterisation of Early-Life Fecal Microbiota in Susceptible and Healthy Pigs to Post-Weaning Diarrhoea

The maternal microbiota drives early postnatal innate immune development

(2016) M. Gomez de Aguero et al.   SCIENCE

Dietary inulin affects the intestinal microbiota in sows and their suckling piglets

(2015) Nadine Paßlack et al.   BMC Veterinary Research

Evolution of chemical diversity by coordinated gene swaps in type II polyketide gene clusters

(2015) Maureen E. Hillenmeyer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Early-life establishment of the swine gut microbiome and impact on host phenotypes

(2015) Núria Mach et al.   Environmental Microbiology Reports

The impact of early gut microbiota modulation on the risk of child disease: alert to accuracy in probiotic studies

(2015) E. Isolauri et al.   Beneficial Microbes

Intestinal microbial communities associated with acute enteric infections and disease recovery

(2015) Pallavi Singh et al.   Microbiome

Lactulose and Lactobacillus plantarum, a Potential Complementary Synbiotic To Control Postweaning Colibacillosis in Piglets

(2014) A. A. Guerra-Ordaz et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial Community Dynamics and Stability during an Ammonia-Induced Shift to Syntrophic Acetate Oxidation

(2014) Jeffrey J. Werner et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fusobacterium and Enterobacteriaceae: Important players for CRC?

(2014) Emma Allen-Vercoe et al.   IMMUNOLOGY LETTERS

Host adaptive immunity alters gut microbiota

(2014) Husen Zhang et al.   ISME Journal

Assessment of fecal bacterial diversity among healthy piglets during the weaning transition

(2014) Edward Alain B. Pajarillo et al.   JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY

Maternal Short-Chain Fructooligosaccharide Supplementation Influences Intestinal Immune System Maturation in Piglets

(2014) Cindy Le Bourgot et al.   PLoS One

Transfer of gut microbiota from lean and obese mice to antibiotic-treated mice

(2014) Merete Ellekilde et al.   Scientific Reports

Choosing and using diversity indices: insights for ecological applications from the German Biodiversity Exploratories

(2014) E. Kathryn Morris et al.   Ecology and Evolution

The damaging effects of short chain fatty acids on Escherichia coli membranes

(2013) Liam A. Royce et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Decreased gut microbiota diversity, delayed Bacteroidetes colonisation and reduced Th1 responses in infants delivered by Caesarean section

(2013) Hedvig E Jakobsson et al.   GUT

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Development of Quantitative PCR Assays Targeting the 16S rRNA Genes of Enterococcus spp. and Their Application to the Identification of Enterococcus Species in Environmental Samples

(2012) Hodon Ryu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PANDAseq: paired-end assembler for illumina sequences

(2012) Andre P Masella et al.   BMC BIOINFORMATICS

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

Susceptibility towards Enterotoxigenic Escherichia coli F4ac Diarrhea Is Governed by the MUC13 Gene in Pigs

(2012) Jun Ren et al.   PLoS One

Capillary electrophoresis single-strand conformation polymorphism for the monitoring of gastrointestinal microbiota of chicken flocks

(2012) C. Pissavin et al.   POULTRY SCIENCE

Intestinal Inflammation Targets Cancer-Inducing Activity of the Microbiota

(2012) J. C. Arthur et al.   SCIENCE

Juvenile ferric iron prevents microbiota dysbiosis and colitis in adult rodents

(2012) Chourouk Ettreiki   WORLD JOURNAL OF GASTROENTEROLOGY

Sparse PLS discriminant analysis: biologically relevant feature selection and graphical displays for multiclass problems

(2011) Kim-Anh Lê Cao et al.   BMC BIOINFORMATICS

GENE-Counter: A Computational Pipeline for the Analysis of RNA-Seq Data for Gene Expression Differences

(2011) Jason S. Cumbie et al.   PLoS One

Establishment of Normal Gut Microbiota Is Compromised under Excessive Hygiene Conditions

(2011) Bettina Schmidt et al.   PLoS One

Comparative Metagenomics and Population Dynamics of the Gut Microbiota in Mother and Infant

(2010) Parag A. Vaishampayan et al.   Genome Biology and Evolution

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Succession of microbial consortia in the developing infant gut microbiome

(2010) J. E. Koenig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Like Will to Like: Abundances of Closely Related Species Can Predict Susceptibility to Intestinal Colonization by Pathogenic and Commensal Bacteria

(2010) Bärbel Stecher et al.   PLoS Pathogens

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Environmentally-acquired bacteria influence microbial diversity and natural innate immune responses at gut surfaces

(2009) Imke E Mulder et al.   BMC BIOLOGY

Nutriose, a prebiotic low-digestible carbohydrate, stimulates gut mucosal immunity and prevents TNBS-induced colitis in piglets

(2009) Philippe R. Pouillart et al.   INFLAMMATORY BOWEL DISEASES

StatFingerprints: a friendly graphical interface program for processing and analysis of microbial fingerprint profiles

(2009) R. J. MICHELLAND et al.   Molecular Ecology Resources

Maternal-to-Infant Transmission of Probiotics: Concept Validation in Mice, Rats, and Pigs

(2009) Randal K. Buddington et al.   Neonatology

Mucosal Glycan Foraging Enhances Fitness and Transmission of a Saccharolytic Human Gut Bacterial Symbiont

(2008) Eric C. Martens et al.   Cell Host & Microbe

Evaluating different approaches that test whether microbial communities have the same structure

(2008) Patrick D Schloss   ISME Journal