The menu varies with metabarcoding practices: A case study with the bat Plecotus auritus

Identifying the diet of a declining prairie grouse using DNA metabarcoding

(2018) Daniel S. Sullins et al.   AUK

Multifaceted DNA metabarcoding: Validation of a noninvasive, next-generation approach to studying bat populations

(2018) Joel F. Swift et al.   Evolutionary Applications

Dietary niche partitioning between sympatric wood mouse species (Muridae: Apodemus) revealed by DNA meta-barcoding analysis

(2018) Jun J Sato et al.   JOURNAL OF MAMMALOGY

Agriculture shapes the trophic niche of a bat preying on multiple pest arthropods across Europe: Evidence from DNA metabarcoding

(2018) Ostaizka Aizpurua et al.   MOLECULAR ECOLOGY

Assessing niche partitioning of co-occurring sibling bat species by DNA metabarcoding

(2018) Aitor Arrizabalaga-Escudero et al.   MOLECULAR ECOLOGY

Minimizing polymerase biases in metabarcoding

(2018) Ruth V. Nichols et al.   Molecular Ecology Resources

Metabarcoding for the parallel identification of several hundred predators and their prey: Application to bat species diet analysis

(2018) Maxime Galan et al.   Molecular Ecology Resources

Diet shifts by adult flightless dung beetles Circellium bacchus, revealed using DNA metabarcoding, reflect complex life histories

(2018) Graham I. H. Kerley et al.   OECOLOGIA

Spatiotemporal and demographic variation in the diet of New Zealand lesser short-tailed bats (Mystacina tuberculata )

(2018) Zenon J. Czenze et al.   Ecology and Evolution

An improved method for utilizing high-throughput amplicon sequencing to determine the diets of insectivorous animals

(2018) Michelle A. Jusino et al.   Molecular Ecology Resources

Promises and pitfalls of using high-throughput sequencing for diet analysis

(2018) Antton Alberdi et al.   Molecular Ecology Resources

Table for five, please: Dietary partitioning in boreal bats

(2018) Eero J. Vesterinen et al.   Ecology and Evolution

Liver microbiome of Peromyscus leucopus , a key reservoir host species for emerging infectious diseases in North America

(2017) A. André et al.   INFECTION GENETICS AND EVOLUTION

Application of DNA metabarcoding on faeces to identify European catfish Silurus glanis diet

(2017) N. Guillerault et al.   JOURNAL OF FISH BIOLOGY

Comparison of diet and prey selectivity of the Pyrenean desman and the Eurasian water shrew using next-generation sequencing methods

(2017) Marjorie Biffi et al.   MAMMALIAN BIOLOGY

Not only mosses: lemming winter diets as described by DNA metabarcoding

(2017) Eeva M. Soininen et al.   POLAR BIOLOGY

Estimating and mitigating amplification bias in qualitative and quantitative arthropod metabarcoding

(2017) Henrik Krehenwinkel et al.   Scientific Reports

Female dietary bias towards large migratory moths in the European free-tailed bat (Tadarida teniotis)

(2016) Vanessa A. Mata et al.   Biology Letters

Fecal metagenomics for the simultaneous assessment of diet, parasites, and population genetics of an understudied primate

(2016) Amrita Srivathsan et al.   Frontiers in Zoology

The effects of parameter choice on defining molecular operational taxonomic units and resulting ecological analyses of metabarcoding data

(2016) Elizabeth L. Clare et al.   GENOME

What you need is what you eat? Prey selection by the bat Myotis daubentonii

(2016) Eero J. Vesterinen et al.   MOLECULAR ECOLOGY

Concealed by darkness: interactions between predatory bats and nocturnally migrating songbirds illuminated by DNA sequencing

(2016) Carlos Ibáñez et al.   MOLECULAR ECOLOGY

iNEXT: an R package for rarefaction and extrapolation of species diversity (Hill numbers)

(2016) T. C. Hsieh et al.   Methods in Ecology and Evolution

18S rRNA V9 metabarcoding for diet characterization: a critical evaluation with two sympatric zooplanktivorous fish species

(2016) Aitor Albaina et al.   Ecology and Evolution

DNA Metabarcoding Reveals Diet Overlap between the Endangered Walia Ibex and Domestic Goats - Implications for Conservation

(2016) Berihun Gebremedhin et al.   PLoS One

Dietary overlap and seasonality in three species of mormoopid bats from a tropical dry forest

(2015) Valeria B. Salinas-Ramos et al.   MOLECULAR ECOLOGY

DNA metabarcoding illuminates dietary niche partitioning by African large herbivores

(2015) Tyler R. Kartzinel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metabarcoding dietary analysis of coral dwelling predatory fish demonstrates the minor contribution of coral mutualists to their highly partitioned, generalist diet

(2015) Matthieu Leray et al.   PeerJ

Molecular detection of trophic interactions: emerging trends, distinct advantages, significant considerations and conservation applications

(2014) Elizabeth L. Clare   Evolutionary Applications

Second generation sequencing and morphological faecal analysis reveal unexpected foraging behaviour by Myotis nattereri (Chiroptera, Vespertilionidae) in winter

(2014) Paul R Hope et al.   Frontiers in Zoology

Comparing the effectiveness of metagenomics and metabarcoding for diet analysis of a leaf-feeding monkey (Pygathrix nemaeus)

(2014) Amrita Srivathsan et al.   Molecular Ecology Resources

Cover Cropping Alters the Diet of Arthropods in a Banana Plantation: A Metabarcoding Approach

(2014) Gregory Mollot et al.   PLoS One

Testing DNA Barcode Performance in 1000 Species of European Lepidoptera: Large Geographic Distances Have Small Genetic Impacts

(2014) Peter Huemer et al.   PLoS One

Dietary Composition, Resource Partitioning and Trophic Niche Overlap in Three Forest Foliage-Gleaning Bats in Central Europe

(2013) Michal Andreas et al.   ACTA CHIROPTEROLOGICA

Who's for dinner? High-throughput sequencing reveals bat dietary differentiation in a biodiversity hotspot where prey taxonomy is largely undescribed

(2013) Joanna M. Burgar et al.   MOLECULAR ECOLOGY

An inordinate fondness for beetles? Variation in seasonal dietary preferences of night-roosting big brown bats (Eptesicus fuscus)

(2013) Elizabeth L. Clare et al.   MOLECULAR ECOLOGY

Dietary competition between the alien Asian Musk Shrew (Suncus murinus) and a re-introduced population of Telfair's Skink (Leiolopisma telfairii)

(2013) D. S. Brown et al.   MOLECULAR ECOLOGY

A pragmatic approach to the analysis of diets of generalist predators: the use of next-generation sequencing with no blocking probes

(2013) J. Piñol et al.   Molecular Ecology Resources

A DNA Metabarcoding Study of a Primate Dietary Diversity and Plasticity across Its Entire Fragmented Range

(2013) Erwan Quéméré et al.   PLoS One

Models and estimators linking individual-based and sample-based rarefaction, extrapolation and comparison of assemblages

(2012) R. K. Colwell et al.   Journal of Plant Ecology

Carnivore diet analysis based on next-generation sequencing: application to the leopard cat (Prionailurus bengalensis) in Pakistan

(2012) WASIM SHEHZAD et al.   MOLECULAR ECOLOGY

Trophic niche partitioning of cryptic species of long-eared bats in Switzerland: implications for conservation

(2011) Sohrab Ashrafi et al.   EUROPEAN JOURNAL OF WILDLIFE RESEARCH

Who is eating what: diet assessment using next generation sequencing

(2011) FRANCOIS POMPANON et al.   MOLECULAR ECOLOGY

Eating local: influences of habitat on the diet of little brown bats (Myotis lucifugus)

(2011) E. L. CLARE et al.   MOLECULAR ECOLOGY

Molecular Diet Analysis of Two African Free-Tailed Bats (Molossidae) Using High Throughput Sequencing

(2011) Kristine Bohmann et al.   PLoS One

Barcoding a Quantified Food Web: Crypsis, Concepts, Ecology and Hypotheses

(2011) M. Alex Smith et al.   PLoS One

High-throughput sequencing offers insight into mechanisms of resource partitioning in cryptic bat species

(2011) Orly Razgour et al.   Ecology and Evolution

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Pyrosequencing faecal DNA to determine diet of little penguins: is what goes in what comes out?

(2010) Bruce E. Deagle et al.   CONSERVATION GENETICS

Taxon-specific PCR for DNA barcoding arthropod prey in bat faeces

(2010) MATT R. K. ZEALE et al.   Molecular Ecology Resources

The relative influence of competition and prey defences on the trophic structure of animalivorous bat ensembles

(2010) M. Corrie Schoeman et al.   OECOLOGIA

Analysis of Australian fur seal diet by pyrosequencing prey DNA in faeces

(2009) BRUCE E. DEAGLE et al.   MOLECULAR ECOLOGY

New perspectives in diet analysis based on DNA barcoding and parallel pyrosequencing: thetrnL approach

(2009) ALICE VALENTINI et al.   Molecular Ecology Resources

NCBI BLAST: a better web interface

(2008) M. Johnson et al.   NUCLEIC ACIDS RESEARCH