Frequent chloroplast capture among Isodon (Lamiaceae) species in Japan revealed by phylogenies based on variation in chloroplast and nuclear DNA

Geographic genetic structure of Iberian columbines (gen. Aquilegia)

(2017) Jose L. Garrido et al.   PLANT SYSTEMATICS AND EVOLUTION

Resolving phylogenetic relationships of the recently radiated carnivorous plant genus Sarracenia using target enrichment

(2015) Jessica D. Stephens et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

High-throughput linkage mapping of Australian white cypress pine (Callitris glaucophylla) and map transferability to related species

(2015) Shota Sakaguchi et al.   Tree Genetics & Genomes

DNA Barcoding of Rhodiola (Crassulaceae): A Case Study on a Group of Recently Diversified Medicinal Plants from the Qinghai-Tibetan Plateau

(2015) Jian-Qiang Zhang et al.   PLoS One

PyRAD: assembly of de novo RADseq loci for phylogenetic analyses

(2014) Deren A. R. Eaton   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Development of phylogenetic markers from single-copy nuclear genes for multi locus, species level analyses in the mint family (Lamiaceae)

(2012) Manuel António Curto et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Molecular data and ecological niche modelling reveal a highly dynamic evolutionary history of the East Asian Tertiary relict Cercidiphyllum (Cercidiphyllaceae)

(2012) Xin-Shuai Qi et al.   NEW PHYTOLOGIST

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences

(2011) Julian M. Catchen et al.   G3-Genes Genomes Genetics

Disjunct distribution of chloroplast DNA haplotypes in the understory perennial Veratrum album ssp. oxysepalum (Melanthiaceae) in Japan as a result of ancient introgression

(2010) Ryo Kikuchi et al.   NEW PHYTOLOGIST

Molecular phylogeny of Isodon (Lamiaceae) in Japan using chloroplast DNA sequences: recent rapid radiations or ancient introgressive hybridization?

(2010) MASAYUKI MAKI et al.   PLANT SPECIES BIOLOGY

A Statistical Approach for Distinguishing Hybridization and Incomplete Lineage Sorting

(2009) Simon Joly et al.   AMERICAN NATURALIST

Molecular Markers and Concepts of Plant Evolutionary Relationships: Progress, Promise, and Future Prospects

(2009) Douglas E. Soltis et al.   CRITICAL REVIEWS IN PLANT SCIENCES

Reticulate evolution and incomplete lineage sorting among the ponderosa pines

(2009) Ann Willyard et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Evidence of chloroplast capture in South American Nothofagus (subgenus Nothofagus, Nothofagaceae)

(2009) M. Cristina Acosta et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION