An integrated and comprehensive transcriptome reveals immune-related genes and signal pathways in topmouth culter (Culter alburnus)

Determination of genetic diversity of wild and cultured topmouth culter (Culter alburnus) inhabiting China using mitochondrial DNA and microsatellites

(2015) Pengzhi Qi et al.   BIOCHEMICAL SYSTEMATICS AND ECOLOGY

Virus genomes and virus-host interactions in aquaculture animals

(2015) QiYa Zhang et al.   Science China-Life Sciences

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Transcriptome analysis reveals positive selection on the divergent between topmouth culter and zebrafish

(2014) Li Ren et al.   GENE

De Novo Characterization of the Spleen Transcriptome of the Large Yellow Croaker (Pseudosciaena crocea) and Analysis of the Immune Relevant Genes and Pathways Involved in the Antiviral Response

(2014) Yinnan Mu et al.   PLoS One

Assessing the genetic diversity and population structure of Culter alburnus in China based on mitochondrial 16S rRNA and COI gene sequences

(2013) Pengzhi Qi et al.   BIOCHEMICAL SYSTEMATICS AND ECOLOGY

Transcriptome profiling and digital gene expression analysis of Nile tilapia (Oreochromis niloticus) infected by Streptococcus agalactiae

(2013) Rui Zhang et al.   MOLECULAR BIOLOGY REPORTS

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Molecular basis and genetic improvement of economically important traits in aquaculture animals

(2012) JianFang Gui et al.   CHINESE SCIENCE BULLETIN

Molecular regulation of interferon antiviral response in fish

(2012) Yi-Bing Zhang et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Development and characterization of novel polymorphic microsatellite loci in Siniperca scherzeri Steindachner and Siniperca chuatsi (Basilewsky)

(2012) Wei Huang et al.   MOLECULAR BIOLOGY REPORTS

High-Throughput Sequence Analysis of Turbot (Scophthalmus maximus) Transcriptome Using 454-Pyrosequencing for the Discovery of Antiviral Immune Genes

(2012) Patricia Pereiro et al.   PLoS One

Teleost fish interferons and their role in immunity

(2011) Jun Zou et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Toll-like receptors in bony fish: From genomics to function

(2011) Yniv Palti   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Analysis of the Asian Seabass Transcriptome Based on Expressed Sequence Tags

(2011) J. H. Xia et al.   DNA RESEARCH

Zebrafish mRNA sequencing deciphers novelties in transcriptome dynamics during maternal to zygotic transition

(2011) Håvard Aanes et al.   GENOME RESEARCH

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Analysis of porcine MHC using microarrays

(2011) Yu Gao et al.   VETERINARY IMMUNOLOGY AND IMMUNOPATHOLOGY

Anatomical and Histological Characteristics of the Intestine of the Topmouth Culter (Culter alburnus)

(2011) X. J. Cao et al.   ANATOMIA HISTOLOGIA EMBRYOLOGIA

Transcriptome and expression profiling analysis revealed changes of multiple signaling pathways involved in immunity in the large yellow croaker during Aeromonas hydrophila infection

(2010) Yinnan Mu et al.   BMC GENOMICS

NOD-like receptor (NLR) signaling beyond the inflammasome

(2010) Patrick J. Shaw et al.   EUROPEAN JOURNAL OF IMMUNOLOGY

Characterization of the zebrafish T cell receptor β locus

(2010) Nathan D. Meeker et al.   IMMUNOGENETICS

Identification and Characterization of Full-Length cDNAs in Channel Catfish (Ictalurus punctatus) and Blue Catfish (Ictalurus furcatus)

(2010) Fei Chen et al.   PLoS One

T Cell Activation

(2009) Jennifer E. Smith-Garvin et al.   Annual Review of Immunology

B Cell Signaling and Fate Decision

(2009) Tomohiro Kurosaki et al.   Annual Review of Immunology

Molecular characterization of trypsinogens and development of trypsinogen gene expression and tryptic activities in grass carp (Ctenopharyngodon idellus) and topmouth culter (Culter alburnus)

(2009) Guo-Liang Ruan et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY

Identification, characterization and genetic mapping of TLR7, TLR8a1 and TLR8a2 genes in rainbow trout (Oncorhynchus mykiss)

(2009) Yniv Palti et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Cloning and expression analysis of three striped trumpeter (Latris lineata) pro-inflammatory cytokines, TNF-α, IL-1β and IL-8, in response to infection by the ectoparasitic, Chondracanthus goldsmidi

(2009) J.M. Covello et al.   FISH & SHELLFISH IMMUNOLOGY

The roles of TLRs, RLRs and NLRs in pathogen recognition

(2009) T. Kawai et al.   INTERNATIONAL IMMUNOLOGY

Transcriptome of embryonic and neonatal mouse cortex by high-throughput RNA sequencing

(2009) X. Han et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

NOD-Like Receptors: Role in Innate Immunity and Inflammatory Disease

(2008) Grace Chen et al.   Annual Review of Pathology-Mechanisms of Disease

Applications of next-generation sequencing technologies in functional genomics

(2008) Olena Morozova et al.   GENOMICS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS