Farm-like indoor microbiota in non-farm homes protects children from asthma development

Early-life home environment and risk of asthma among inner-city children

(2018) George T. O'Connor et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

Crawling-induced floor dust resuspension affects the microbiota of the infant breathing zone

(2018) Heidi K. Hyytiäinen et al.   Microbiome

Soil exposure modifies the gut microbiota and supports immune tolerance in a mouse model

(2018) Noora Ottman et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

Qiita: rapid, web-enabled microbiome meta-analysis

(2018) Antonio Gonzalez et al.   NATURE METHODS

Microbial characteristics in homes of asthmatic and non-asthmatic adults in the ECRHS cohort

(2017) M. Valkonen et al.   INDOOR AIR

Dose-dependent immunomodulating effects of endotoxin in allergic airway inflammation

(2017) Sudhir Kumar et al.   Innate Immunity

Quantitative assessment of microbes from samples of indoor air and dust

(2017) Hanna K Leppänen et al.   Journal of Exposure Science and Environmental Epidemiology

Assembly, structure, function and regulation of type III secretion systems

(2017) Wanyin Deng et al.   NATURE REVIEWS MICROBIOLOGY

Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns

(2017) Amnon Amir et al.   mSystems

Environmental and mucosal microbiota and their role in childhood asthma

(2016) L. T. Birzele et al.   ALLERGY

Innate Immunity and Asthma Risk in Amish and Hutterite Farm Children

(2016) Michelle M. Stein et al.   NEW ENGLAND JOURNAL OF MEDICINE

Farm exposures are associated with lower percentage of circulating myeloid dendritic cell subtype 2 at age 6

(2015) M.-V. Martikainen et al.   ALLERGY

Moisture damage in home associates with systemic inflammation in children

(2015) K. Mustonen et al.   INDOOR AIR

Revisiting the hygiene hypothesis for allergy and asthma

(2015) Andrew H. Liu   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

Continental-scale distributions of dust-associated bacteria and fungi

(2015) Albert Barberán et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Farm dust and endotoxin protect against allergy through A20 induction in lung epithelial cells

(2015) M. J. Schuijs et al.   SCIENCE

Microbiota of the indoor environment: a meta-analysis

(2015) Rachel I. Adams et al.   Microbiome

Quantity and diversity of environmental microbial exposure and development of asthma: a birth cohort study

(2014) A. M. Karvonen et al.   ALLERGY

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

Effects of early-life exposure to allergens and bacteria on recurrent wheeze and atopy in urban children

(2014) Susan V. Lynch et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

Sequence Depth, Not PCR Replication, Improves Ecological Inference from Next Generation DNA Sequencing

(2014) Dylan P. Smith et al.   PLoS One

PNAS Plus: From the Cover: Oligotyping analysis of the human oral microbiome

(2014) A. M. Eren et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Fortifying the barrier: the impact of lipid A remodelling on bacterial pathogenesis

(2013) Brittany D. Needham et al.   NATURE REVIEWS MICROBIOLOGY

Associating microbiome composition with environmental covariates using generalized UniFrac distances

(2012) Jun Chen et al.   BIOINFORMATICS

Pulmonary Endotoxin Tolerance Protects against Cockroach Allergen-Induced Asthma-Like Inflammation in a Mouse Model

(2012) Sudha Natarajan et al.   INTERNATIONAL ARCHIVES OF ALLERGY AND IMMUNOLOGY

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Analytical performance of a multiplexed, bead-based cytokine detection system in small volume samples

(2011) Martin Bomert et al.   CLINICAL CHEMISTRY AND LABORATORY MEDICINE

Environmental Mycobacteria: A Threat to Human Health?

(2011) Mónica Rosenblueth et al.   DNA AND CELL BIOLOGY

Exposure to Environmental Microorganisms and Childhood Asthma

(2011) Markus J. Ege et al.   NEW ENGLAND JOURNAL OF MEDICINE

The GABRIEL Advanced Surveys: study design, participation and evaluation of bias

(2011) Jon Genuneit et al.   PAEDIATRIC AND PERINATAL EPIDEMIOLOGY

Microreview: Type IV secretion systems: versatility and diversity in function

(2010) Karin Wallden et al.   CELLULAR MICROBIOLOGY

Maternal vitamin D intake during pregnancy increases gene expression of ILT3 and ILT4 in cord blood

(2010) M. K. Rochat et al.   CLINICAL AND EXPERIMENTAL ALLERGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Virulence factor secretion and translocation by Bordetella species

(2009) Ruchi Shrivastava et al.   CURRENT OPINION IN MICROBIOLOGY

Expression and function of immunoglobulin-like transcripts on tolerogenic dendritic cells

(2009) Juan Wu et al.   HUMAN IMMUNOLOGY

Confirmed Moisture Damage at Home, Respiratory Symptoms and Atopy in Early Life: A Birth-Cohort Study

(2009) A. M. Karvonen et al.   PEDIATRICS

Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples

(2009) James Robert White et al.   PLoS Computational Biology

Structure of the Archaeal Community of the Rumen

(2008) P. H. Janssen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Evaluation of regression methods when immunological measurements are constrained by detection limits

(2008) Hae-Won Uh et al.   BMC IMMUNOLOGY