Regulation of Bacterial Gene Expression by Transcription Attenuation

A multivariate prediction model for Rho-dependent termination of transcription

(2018) Cédric Nadiras et al.   NUCLEIC ACIDS RESEARCH

New tRNA contacts facilitate ligand binding in aMycobacterium smegmatisT box riboswitch

(2018) Anna V. Sherwood et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Riboswitches for the alarmone ppGpp expand the collection of RNA-based signaling systems

(2018) Madeline E. Sherlock et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Riboswitches and Translation Control

(2018) Ronald R. Breaker   Cold Spring Harbor Perspectives in Biology

Rare variants of the FMN riboswitch class in Clostridium difficile and other bacteria exhibit altered ligand specificity

(2018) Ruben M. Atilho et al.   RNA

Modular Organization of the NusA- and NusG-Stimulated RNA Polymerase Pause Signal That Participates in the Bacillus subtilis trp Operon Attenuation Mechanism

(2017) Smarajit Mondal et al.   JOURNAL OF BACTERIOLOGY

Identification of a Residue (Glu60) in TRAP Required for Inducing Efficient Transcription Termination at the trp Attenuator Independent of Binding Tryptophan and RNA

(2017) Natalie M. McAdams et al.   JOURNAL OF BACTERIOLOGY

Natural RNA Polymerase Aptamers Regulate Transcription in E . coli

(2017) Nadezda Sedlyarova et al.   MOLECULAR CELL

Translational control and Rho-dependent transcription termination are intimately linked in riboswitch regulation

(2017) Laurène Bastet et al.   NUCLEIC ACIDS RESEARCH

Riboswitch diversity and distribution

(2017) Phillip J. McCown et al.   RNA

The lost language of the RNA World

(2017) James W. Nelson et al.   Science Signaling

Identification of Unannotated Small Genes in Salmonella

(2017) Jonghwan Baek et al.   G3-Genes Genomes Genetics

Termination factor Rho: From the control of pervasive transcription to cell fate determination in Bacillus subtilis

(2017) Vladimir Bidnenko et al.   PLoS Genetics

The lost language of the RNA World

(2017) James W. Nelson et al.   Science Signaling

Mechanisms of Bacterial Transcription Termination: All Good Things Must End

(2016) Ananya Ray-Soni et al.   Annual Review of Biochemistry

Riboswitch-Mediated Gene Regulation: Novel RNA Architectures Dictate Gene Expression Responses

(2016) Anna V. Sherwood et al.   Annual Review of Microbiology

sRNA-Mediated Control of Transcription Termination in E. coli

(2016) Nadezda Sedlyarova et al.   CELL

How Widespread is Metabolite Sensing by Ribosome-Arresting Nascent Peptides?

(2016) Britta Seip et al.   JOURNAL OF MOLECULAR BIOLOGY

Phosphoribosyl Diphosphate (PRPP): Biosynthesis, Enzymology, Utilization, and Metabolic Significance

(2016) Bjarne Hove-Jensen et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Transcription termination factor Rho: a hub linking diverse physiological processes in bacteria

(2016) Aleksandra Grylak-Mielnicka et al.   MICROBIOLOGY-SGM

RNA secondary structures regulate three steps of Rho-dependent transcription termination within a bacterial mRNA leader

(2016) Michelle A. Kriner et al.   NUCLEIC ACIDS RESEARCH

Mg2+regulates transcription ofmgtAinSalmonellaTyphimurium via translation of proline codons during synthesis of the MgtL peptide

(2016) Aaron R. Gall et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Learning from the Leaders: Gene Regulation by the Transcription Termination Factor Rho

(2016) Michelle A. Kriner et al.   TRENDS IN BIOCHEMICAL SCIENCES

The Bacterial Transcription Termination Factor Rho Coordinates Mg2+ Homeostasis with Translational Signals

(2015) Michelle A. Kriner et al.   JOURNAL OF MOLECULAR BIOLOGY

Direct observation of the translocation mechanism of transcription termination factor Rho

(2015) Veronika Gocheva et al.   NUCLEIC ACIDS RESEARCH

An RNA motif advances transcription by preventing Rho-dependent termination

(2015) Anastasia Sevostyanova et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Regulation of gene expression: Cryptic β-glucoside (bgl) operon of Escherichia coli as a paradigm

(2015) Dharmesh Harwani   BRAZILIAN JOURNAL OF MICROBIOLOGY

The T box riboswitch: A novel regulatory RNA that utilizes tRNA as its ligand

(2014) Tina M. Henkin   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Structural, Functional, and Taxonomic Diversity of Three PreQ1 Riboswitch Classes

(2014) Phillip J. McCown et al.   CHEMISTRY & BIOLOGY

RNA remodeling by bacterial global regulator CsrA promotes Rho-dependent transcription termination

(2014) N. Figueroa-Bossi et al.   GENES & DEVELOPMENT

Direct Evaluation of tRNA Aminoacylation Status by the T-Box Riboswitch Using tRNA-mRNA Stacking and Steric Readout

(2014) Jinwei Zhang et al.   MOLECULAR CELL

The Bacillus subtilis TRAP Protein Can Induce Transcription Termination in the Leader Region of the Tryptophan Biosynthetic (trp) Operon Independent of the trp Attenuator RNA

(2014) Natalie M. McAdams et al.   PLoS One

Unusually long-lived pause required for regulation of a Rho-dependent transcription terminator

(2014) K. Hollands et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gene regulation by substoichiometric heterocomplex formation of undecameric TRAP and trimeric anti-TRAP

(2014) Elihu C. Ihms et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Control of a Salmonella virulence operon by proline-charged tRNAPro

(2014) E.-J. Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New Paradigm for Allosteric Regulation of Escherichia coli Aspartate Transcarbamoylase

(2013) Gregory M. Cockrell et al.   BIOCHEMISTRY

A Decade of Riboswitches

(2013) Alexander Serganov et al.   CELL

Co-crystal structure of a T-box riboswitch stem I domain in complex with its cognate tRNA

(2013) Jinwei Zhang et al.   NATURE

Interactions of the TnaC nascent peptide with rRNA in the exit tunnel enable the ribosome to respond to free tryptophan

(2013) A. K. Martinez et al.   NUCLEIC ACIDS RESEARCH

T box RNA decodes both the information content and geometry of tRNA to affect gene expression

(2013) J. C. Grigg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A role for Rho-dependent polarity in gene regulation by a noncoding small RNA

(2012) L. Bossi et al.   GENES & DEVELOPMENT

Rho and NusG suppress pervasive antisense transcription in Escherichia coli

(2012) J. M. Peters et al.   GENES & DEVELOPMENT

Active site opening and closure control translocation of multisubunit RNA polymerase

(2012) Anssi M. Malinen et al.   NUCLEIC ACIDS RESEARCH

Activation of Escherichia coli antiterminator BglG requires its phosphorylation

(2012) F. M. Rothe et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Riboswitch control of Rho-dependent transcription termination

(2012) K. Hollands et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

EF-P Is Essential for Rapid Synthesis of Proteins Containing Consecutive Proline Residues

(2012) L. K. Doerfel et al.   SCIENCE

Regulation of gene expression by reiterative transcription

(2011) Charles L Turnbough   CURRENT OPINION IN MICROBIOLOGY

Nascent polypeptide sequences that influence ribosome function

(2011) Luis Rogelio Cruz-Vera et al.   CURRENT OPINION IN MICROBIOLOGY

Termination and antitermination: RNA polymerase runs a stop sign

(2011) Thomas J. Santangelo et al.   NATURE REVIEWS MICROBIOLOGY

Molecular sensing by the aptamer domain of the FMN riboswitch: a general model for ligand binding by conformational selection

(2011) Quentin Vicens et al.   NUCLEIC ACIDS RESEARCH

A Bacterial mRNA Leader that Employs Different Mechanisms to Sense Disparate Intracellular Signals

(2010) Sun-Yang Park et al.   CELL

Transcription termination maintains chromosome integrity

(2010) R. S. Washburn et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes

(2010) Zasha Weinberg et al.   GENOME BIOLOGY

Regulation of Translation Initiation by RNA Binding Proteins

(2009) Paul Babitzke et al.   Annual Review of Microbiology

Promoter and Riboswitch Control of the Mg2+ Transporter MgtA from Salmonella enterica

(2009) M. J. Cromie et al.   JOURNAL OF BACTERIOLOGY

Biochemical Features and Functional Implications of the RNA-Based T-Box Regulatory Mechanism

(2009) A. Gutierrez-Preciado et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Modulation of transcription antitermination in the bgl operon of Escherichia coli by the PTS

(2009) H. Raveh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rho directs widespread termination of intragenic and stable RNA transcription

(2009) J. M. Peters et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

pyr RNA binding to the Bacillus caldolyticus PyrR attenuation protein - characterization and regulation by uridine and guanosine nucleotides

(2008) Casper M. Jørgensen et al.   FEBS Journal

Conserved Residues Asp16 and Pro24 of TnaC-tRNAPro Participate in Tryptophan Induction of tna Operon Expression

(2008) L. R. Cruz-Vera et al.   JOURNAL OF BACTERIOLOGY

Regulation of Pyrimidine Biosynthetic Gene Expression in Bacteria: Repression without Repressors

(2008) C. L. Turnbough et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Slow peptide bond formation by proline and other N-alkylamino acids in translation

(2008) M. Y. Pavlov et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA