Diversity patterns of planktonic microeukaryote communities in tropical floodplain lakes based on 18S rDNA gene sequences

Freshwater biomonitoring in the Information Age

(2017) François Keck et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

The effect of top-predator presence and phenotype on aquatic microbial communities

(2017) Karen E. Sullam et al.   Ecology and Evolution

Microbial eukaryote communities exhibit robust biogeographical patterns along a gradient of Patagonian and Antarctic lakes

(2016) M. Romina Schiaffino et al.   ENVIRONMENTAL MICROBIOLOGY

Environmental factors affecting chlorophyll-a concentration in tropical floodplain lakes, Central Brazil

(2016) Suzana Maria Loures de Oliveira Marcionilio et al.   ENVIRONMENTAL MONITORING AND ASSESSMENT

Patterns and processes in microbial biogeography: do molecules and morphologies give the same answers?

(2016) Luciana F Santoferrara et al.   ISME Journal

Influence of lake trophic conditions on the dominant mixotrophic algal assemblages

(2016) Juan F. Saad et al.   JOURNAL OF PLANKTON RESEARCH

Comparing the effects of landscape and local environmental variables on taxonomic and functional composition of phytoplankton communities

(2016) Karine Borges Machado et al.   JOURNAL OF PLANKTON RESEARCH

Small-scale variability of protistan planktonic communities relative to environmental pressures and biotic interactions at two adjacent coastal stations

(2016) S Genitsaris et al.   MARINE ECOLOGY PROGRESS SERIES

Censusing marine eukaryotic diversity in the twenty-first century

(2016) Matthieu Leray et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Small-scale variability of protistan planktonic communities relative to environmental pressures and biotic interactions at two adjacent coastal stations

(2016) S Genitsaris et al.   MARINE ECOLOGY PROGRESS SERIES

Patchiness of Ciliate Communities Sampled at Varying Spatial Scales along the New England Shelf

(2016) Jean-David Grattepanche et al.   PLoS One

pH Influences the Importance of Niche-Related and Neutral Processes in Lacustrine Bacterioplankton Assembly

(2015) Lijuan Ren et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Spatiotemporal dynamics and determinants of planktonic bacterial and microeukaryotic communities in a Chinese subtropical river

(2015) Yongming Wang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Multi-stressor impacts on fungal diversity and ecosystem functions in streams: natural vs. anthropogenic stress

(2015) M. Tolkkinen et al.   ECOLOGY

Depth shapes α- and β-diversities of microbial eukaryotes in surficial sediments of coastal ecosystems

(2015) Jun Gong et al.   ENVIRONMENTAL MICROBIOLOGY

Marked seasonality and high spatial variability of protist communities in shallow freshwater systems

(2015) Marianne Simon et al.   ISME Journal

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Patterns of Rare and Abundant Marine Microbial Eukaryotes

(2014) Ramiro Logares et al.   CURRENT BIOLOGY

Complex communities of small protists and unexpected occurrence of typical marine lineages in shallow freshwater systems

(2014) Marianne Simon et al.   ENVIRONMENTAL MICROBIOLOGY

Deep sequencing uncovers protistan plankton diversity in the Portuguese Ria Formosa solar saltern ponds

(2014) Sabine Filker et al.   EXTREMOPHILES

Effects of light and prey availability on Arctic freshwater protist communities examined by high-throughput DNA and RNA sequencing

(2014) Sophie Charvet et al.   FEMS MICROBIOLOGY ECOLOGY

Metacommunity organisation, spatial extent and dispersal in aquatic systems: patterns, processes and prospects

(2014) Jani Heino et al.   FRESHWATER BIOLOGY

Metagenetic analysis of patterns of distribution and diversity of marine meiobenthic eukaryotes

(2014) Vera G. Fonseca et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Using lower taxonomic resolution and ecological approaches as a surrogate for plankton species

(2014) Karine Borges Machado et al.   HYDROBIOLOGIA

Microbial diversity and community-environment relationships in boreal streams

(2014) Jani Heino et al.   JOURNAL OF BIOGEOGRAPHY

A metagenetic approach for revealing community structure of marine planktonic copepods

(2014) J. Hirai et al.   Molecular Ecology Resources

Description of Colponema vietnamica sp.n. and Acavomonas peruviana n. gen. n. sp., Two New Alveolate Phyla (Colponemidia nom. nov. and Acavomonidia nom. nov.) and Their Contributions to Reconstructing the Ancestral State of Alveolates and Eukaryotes

(2014) Denis V. Tikhonenkov et al.   PLoS One

Geographic distance and ecosystem size determine the distribution of smallest protists in lacustrine ecosystems

(2013) Cécile Lepère et al.   FEMS MICROBIOLOGY ECOLOGY

Phylogenetic interpretations and ecological potentials of the Mesomycetozoea (Ichthyosporea)

(2013) Sally L. Glockling et al.   Fungal Ecology

Relationships among vegetation, geomorphology and hydrology in the Bananal Island tropical wetlands, Araguaia River basin, Central Brazil

(2013) C.R. Valente et al.   JOURNAL OF SOUTH AMERICAN EARTH SCIENCES

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Seasonal variation of plankton communities influenced by environmental factors in an artificial lake

(2012) Xuemei Li et al.   CHINESE JOURNAL OF OCEANOLOGY AND LIMNOLOGY

Genetic diversity of planktonic eukaryotes in high mountain lakes (Central Pyrenees, Spain)

(2012) Xavier Triadó-Margarit et al.   ENVIRONMENTAL MICROBIOLOGY

Aquatic metabolism short-term response to the flood pulse in a Mediterranean floodplain

(2012) B. Gallardo et al.   HYDROBIOLOGIA

The morphology of predatory flagellate Colpodella pseudoedax Mylnikov et Mylnikov, 2007 (Colpodellida, Alveolata)

(2012) Z. M. Myl’nikova et al.   Inland Water Biology

Biogeography of bacterial communities exposed to progressive long-term environmental change

(2012) Ramiro Logares et al.   ISME Journal

Misuse of the phytoplankton–zooplankton dichotomy: the need to assign organisms as mixotrophs within plankton functional types

(2012) Kevin J. Flynn et al.   JOURNAL OF PLANKTON RESEARCH

Beyond biogeographic patterns: processes shaping the microbial landscape

(2012) China A. Hanson et al.   NATURE REVIEWS MICROBIOLOGY

The terminology of metacommunity ecology

(2012) Amanda K. Winegardner et al.   TRENDS IN ECOLOGY & EVOLUTION

betapart: an R package for the study of beta diversity

(2012) Andrés Baselga et al.   Methods in Ecology and Evolution

Disentangling the spatial patterns in community composition of prokaryotic and eukaryotic lake plankton

(2011) Janne Soininen et al.   LIMNOLOGY AND OCEANOGRAPHY

Metagenetic community analysis of microbial eukaryotes illuminates biogeographic patterns in deep-sea and shallow water sediments

(2011) HOLLY M. BIK et al.   MOLECULAR ECOLOGY

Local and regional factors influencing bacterial community assembly

(2011) Eva S. Lindström et al.   Environmental Microbiology Reports

Heterotrophic microplankton in the lower Hudson River Estuary: potential importance of naked, planktonic amebas for bacterivory and carbon flux

(2010) AE Lesen et al.   AQUATIC MICROBIAL ECOLOGY

Perkinsozoa, a well-known marine protozoan flagellate parasite group, newly identified in lacustrine systems: a review

(2010) Jean-François Mangot et al.   HYDROBIOLOGIA

Seasonal analysis of protistan community structure and diversity at the USC Microbial Observatory (San Pedro Channel, North Pacific Ocean)

(2010) Peter D. Countway et al.   LIMNOLOGY AND OCEANOGRAPHY

Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water

(2010) THORSTEN STOECK et al.   MOLECULAR ECOLOGY

Diversity in a hidden world: potential and limitation of next-generation sequencing for surveys of molecular diversity of eukaryotic microorganisms

(2010) RALPH MEDINGER et al.   MOLECULAR ECOLOGY

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Stochastic Community Assembly Causes Higher Biodiversity in More Productive Environments

(2010) J. M. Chase   SCIENCE

No evidence for environmental and spatial processes in structuring phytoplankton communities

(2009) João C. Nabout et al.   ACTA OECOLOGICA-INTERNATIONAL JOURNAL OF ECOLOGY

Methods for comparative metagenomics

(2009) Daniel H Huson et al.   BMC BIOINFORMATICS

Partitioning the turnover and nestedness components of beta diversity

(2009) Andrés Baselga   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Metagenetics: spending our inheritance on the future

(2009) Jo Handelsman   Microbial Biotechnology

Modelling directional spatial processes in ecological data

(2008) F. Guillaume Blanchet et al.   ECOLOGICAL MODELLING

FORWARD SELECTION OF EXPLANATORY VARIABLES

(2008) F. Guillaume Blanchet et al.   ECOLOGY

Genetic Diversity of Eukaryotic Microorganisms in Lake Taihu, a Large Shallow Subtropical Lake in China

(2008) Meijun Chen et al.   MICROBIAL ECOLOGY