Effects of light and prey availability on Arctic freshwater protist communities examined by high-throughput DNA and RNA sequencing

Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses

(2013) Steven J Blazewicz et al.   ISME Journal

Composition of the summer photosynthetic pico and nanoplankton communities in the Beaufort Sea assessed by T-RFLP and sequences of the 18S rRNA gene from flow cytometry sorted samples

(2012) Sergio Balzano et al.   ISME Journal

The Revised Classification of Eukaryotes

(2012) Sina M. Adl et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Misuse of the phytoplankton–zooplankton dichotomy: the need to assign organisms as mixotrophs within plankton functional types

(2012) Kevin J. Flynn et al.   JOURNAL OF PLANKTON RESEARCH

Pyrosequencing analysis of the protist communities in a High Arctic meromictic lake: DNA preservation and change

(2012) Sophie Charvet et al.   Frontiers in Microbiology

Influence of altered light conditions and grazers on Scrippsiella trochoidea (Dinophyceae) cyst ­formation

(2011) V Lundgren et al.   AQUATIC MICROBIAL ECOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Extreme ecosystems and geosystems in the Canadian High Arctic: Ward Hunt Island and vicinity

(2011) Warwick F. Vincent et al.   ECOSCIENCE

Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys

(2011) Jeffrey J Werner et al.   ISME Journal

Mixotrophy in the Newly Described Phototrophic Dinoflagellate Woloszynskia cincta from Western Korean Waters: Feeding Mechanism, Prey Species and Effect of Prey Concentration

(2011) NAM SEON KANG et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Alternative Nutritional Strategies in Protists: Symposium Introduction and a Review of Freshwater Protists that Combine Photosynthesis and Heterotrophy1

(2011) ROBERT W. SANDERS   JOURNAL OF EUKARYOTIC MICROBIOLOGY

High Arctic lakes as sentinel ecosystems: Cascading regime shifts in climate, ice cover, and mixing

(2011) Derek R. Mueller et al.   LIMNOLOGY AND OCEANOGRAPHY

Rapid Shifts in the Structure and Composition of a Protistan Assemblage During Bottle Incubations Affect Estimates of Total Protistan Species Richness

(2011) Diane Y. Kim et al.   MICROBIAL ECOLOGY

Disturbance regime changes the trait distribution, phylogenetic structure and community assembly of tropical rain forests

(2011) Yi Ding et al.   OIKOS

Arctic Ocean Microbial Community Structure before and after the 2007 Record Sea Ice Minimum

(2011) André M. Comeau et al.   PLoS One

Chrysophytes and other protists in High Arctic lakes: molecular gene surveys, pigment signatures and microscopy

(2011) Sophie Charvet et al.   POLAR BIOLOGY

Protist community composition during spring in an Arctic flaw lead polynya

(2011) Ramon Terrado et al.   POLAR BIOLOGY

Effects of loss of perennial lake ice on mixing and phytoplankton dynamics: insights from High Arctic Canada

(2011) Julie Veillette et al.   ANNALS OF GLACIOLOGY

Picante: R tools for integrating phylogenies and ecology

(2010) S. W. Kembel et al.   BIOINFORMATICS

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

(2010) Susan M. Huse et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial ecosystem responses to rapid climate change in the Arctic

(2010) Warwick F Vincent   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

(2009) Victor Kunin et al.   ENVIRONMENTAL MICROBIOLOGY

The effects of light availability in shallow, turbid waters: a mesocosm study

(2009) M. E. Llames et al.   JOURNAL OF PLANKTON RESEARCH

New Insights into the Diversity of Marine Picoeukaryotes

(2009) Fabrice Not et al.   PLoS One

Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples

(2009) James Robert White et al.   PLoS Computational Biology

MARINE-DERIVED DINOFLAGELLATES IN ANTARCTIC SALINE LAKES: COMMUNITY COMPOSITION AND ANNUAL DYNAMICS

(2008) Karin Rengefors et al.   JOURNAL OF PHYCOLOGY