Weighted gene coexpression network analysis identifies specific transcriptional modules and hub genes related to intramuscular fat traits in chicken breast muscle

Weighted gene co-expression network analysis reveals potential genes involved in early metamorphosis process in sea cucumber Apostichopus japonicus

(2018) Yongxin Li et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

MicroRNA-200b regulates preadipocyte proliferation and differentiation by targeting KLF4

(2018) Linyuan Shen et al.   BIOMEDICINE & PHARMACOTHERAPY

Identification of differentially expressed genes and pathways for intramuscular fat metabolism between breast and thigh tissues of chickens

(2018) Huanxian Cui et al.   BMC GENOMICS

PCYT1A Regulates Phosphatidylcholine Homeostasis from the Inner Nuclear Membrane in Response to Membrane Stored Curvature Elastic Stress

(2018) Afreen Haider et al.   DEVELOPMENTAL CELL

Characterization of miRNA transcriptome profiles related to breast muscle development and intramuscular fat deposition in chickens

(2018) Shouyi Fu et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

25-Hydroxycholesterol activates the expression of cholesterol 25-hydroxylase in an LXR-dependent mechanism

(2018) Ying Liu et al.   JOURNAL OF LIPID RESEARCH

A thumbwheel mechanism for APOA1 activation of LCAT activity in HDL

(2018) Allison L. Cooke et al.   JOURNAL OF LIPID RESEARCH

The structure of human Nocturnin reveals a conserved ribonuclease domain that represses target transcript translation and abundance in cells

(2018) Elizabeth T. Abshire et al.   NUCLEIC ACIDS RESEARCH

Kinetic characterization of bile salt transport by human NTCP (SLC10A1)

(2018) Márton Jani et al.   TOXICOLOGY IN VITRO

Identification of Key Pathways and Genes in the Dynamic Progression of HCC Based on WGCNA

(2018) Li Yin et al.   Genes

The 3-hydroxyacyl-CoA dehydratases HACD1 and HACD2 exhibit functional redundancy and are active in a wide range of fatty acid elongation pathways

(2017) Megumi Sawai et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Endocytosis, Metastasis and Beyond: Multiple Facets of SNX9

(2017) Nawal Bendris et al.   TRENDS IN CELL BIOLOGY

Lower Expression of SLC27A1 Enhances Intramuscular Fat Deposition in Chicken via Down-Regulated Fatty Acid Oxidation Mediated by CPT1A

(2017) Fengfang Qiu et al.   Frontiers in Physiology

The regulation of IMF deposition in pectoralis major of fast- and slow- growing chickens at hatching

(2017) Lu Liu et al.   Journal of Animal Science and Biotechnology

Genome-wide association between single nucleotide polymorphisms with beef fatty acid profile in Nellore cattle using the single step procedure

(2016) Marcos V. A. Lemos et al.   BMC GENOMICS

Inositol Hexakisphosphate Kinase 1 (IP6K1) Regulates Inositol Synthesis in Mammalian Cells

(2016) Wenxi Yu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

PREX2 promotes the proliferation, invasion and migration of pancreatic cancer cells by modulating the PI3K signaling pathway

(2016) Jianyi Yang et al.   Oncology Letters

Association of H-FABP gene polymorphisms with intramuscular fat content in Three-yellow chickens and Hetian-black chickens

(2016) Yong Wang et al.   Journal of Animal Science and Biotechnology

PPARα signal pathway gene expression is associated with fatty acid content in yak and cattle longissimus dorsi muscle

(2015) W. Qin et al.   GENETICS AND MOLECULAR RESEARCH

Endothelial Cell Surface Expressed Chemotaxis and Apoptosis Regulator (ECSCR) Regulates Lipolysis in White Adipocytes via the PTEN/AKT Signaling Pathway

(2015) Sreenivasulu Kilari et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Lxr-driven enterocyte lipid droplet formation delays transport of ingested lipids

(2014) Lourdes Cruz-Garcia et al.   JOURNAL OF LIPID RESEARCH

BMP7 Drives Human Adipogenic Stem Cells into Metabolically Active Beige Adipocytes

(2014) Meshail Okla et al.   LIPIDS

IP6K structure and the molecular determinants of catalytic specificity in an inositol phosphate kinase family

(2014) Huanchen Wang et al.   Nature Communications

BMP4 and BMP7 induce the white-to-brown transition of primary human adipose stem cells

(2013) Manuela Elsen et al.   AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY

The identification of 14 new genes for meat quality traits in chicken using a genome-wide association study

(2013) Yanfa Sun et al.   BMC GENOMICS

NPC1, intracellular cholesterol trafficking and atherosclerosis

(2013) Xiao-Hua Yu et al.   CLINICA CHIMICA ACTA

Potential role of ATM in hepatocyte endocytosis of ApoE-deficient, ApoB48-containing lipoprotein in ApoE-deficient mice

(2013) JIANHUA WU et al.   INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Quantitative trait loci segregating in crosses between New Hampshire and White Leghorn chicken lines: III. Fat deposition and intramuscular fat content

(2012) M. K. Nassar et al.   ANIMAL GENETICS

Ginsenoside-Rb1 Promotes Adipogenesis Through Regulation of PPARγ and MicroRNA-27b

(2012) L.-S. Chan et al.   HORMONE AND METABOLIC RESEARCH

Structural Origins for the Loss of Catalytic Activities of Bifunctional Human LTA4H Revealed through Molecular Dynamics Simulations

(2012) Sundarapandian Thangapandian et al.   PLoS One

Lysocardiolipin acyltransferase 1 (ALCAT1) controls mitochondrial DNA fidelity and biogenesis through modulation of MFN2 expression

(2012) J. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The human geneSLC25A17encodes a peroxisomal transporter of coenzyme A, FAD and NAD+

(2011) Gennaro Agrimi et al.   BIOCHEMICAL JOURNAL

Role of plasma phospholipid transfer protein in lipid and lipoprotein metabolism

(2011) John J. Albers et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS

Effects of caponisation on lipid and fatty acid composition of intramuscular and abdominal fat of medium-growth broilers

(2011) V.J. Sinanoglou et al.   BRITISH POULTRY SCIENCE

The association between acyl-CoA synthetase (ACSL4) polymorphism and intramuscular fat content in (Landrace × Yorkshire) × Duroc pigs

(2011) A. Ruść et al.   MEAT SCIENCE

Exome sequencing identifies ACSF3 as a cause of combined malonic and methylmalonic aciduria

(2011) Jennifer L Sloan et al.   NATURE GENETICS

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

(2011) Chen Xie et al.   NUCLEIC ACIDS RESEARCH

A Conserved Role for SNX9-Family Members in the Regulation of Phagosome Maturation during Engulfment of Apoptotic Cells

(2011) Johann Almendinger et al.   PLoS One

Characterisation of expression patterns and functional role of Cactin in early zebrafish development

(2010) Paola Atzei et al.   GENE EXPRESSION PATTERNS

Age-related expression profile of the SLC27A1 gene in chicken tissues

(2010) Yan Wang et al.   MOLECULAR BIOLOGY REPORTS

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Intramuscular fat content in meat-producing animals: development, genetic and nutritional control, and identification of putative markers

(2009) J. F. Hocquette et al.   Animal

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Simulation of structural and functional properties of mevalonate diphosphate decarboxylase (MVD)

(2009) Samantha Weerasinghe et al.   JOURNAL OF MOLECULAR MODELING

Fas-Mediated Apoptosis Is Regulated by the Extracellular Matrix Protein CCN1 (CYR61) In Vitro and In Vivo

(2009) V. Juric et al.   MOLECULAR AND CELLULAR BIOLOGY

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

SNX9 regulates tubular invagination of the plasma membrane through interaction with actin cytoskeleton and dynamin 2

(2008) N. Shin et al.   JOURNAL OF CELL SCIENCE

The microsomal cardiolipin remodeling enzyme acyl-CoA lysocardiolipin acyltransferase is an acyltransferase of multiple anionic lysophospholipids

(2008) Yang Zhao et al.   JOURNAL OF LIPID RESEARCH