Genome-Wide Analysis of ROS Antioxidant Genes in Resurrection Species Suggest an Involvement of Distinct ROS Detoxification Systems during Desiccation

Massive tandem proliferation of ELIPs supports convergent evolution of desiccation tolerance across land plants

(2019) Robert VanBuren et al.   PLANT PHYSIOLOGY

Molecular responses to dehydration and desiccation in desiccation-tolerant angiosperm plants

(2018) Qingwei Zhang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genome-Wide Identification and Expression Profiling of Ascorbate Peroxidase (APX) and Glutathione Peroxidase (GPX) Genes Under Drought Stress in Sorghum (Sorghum bicolor L.)

(2018) M. Aydın Akbudak et al.   JOURNAL OF PLANT GROWTH REGULATION

Genome-wide investigation and expression profiling of APX gene family in Gossypium hirsutum provide new insights in redox homeostasis maintenance during different fiber development stages

(2018) Chengcheng Tao et al.   MOLECULAR GENETICS AND GENOMICS

Extreme haplotype variation in the desiccation-tolerant clubmoss Selaginella lepidophylla

(2018) Robert VanBuren et al.   Nature Communications

Genome-wide identification of glutathione peroxidase (GPX) gene family and their response to abiotic stress in cucumber

(2018) Yong Zhou et al.   3 Biotech

Genome-wide identification of glutathione peroxidase (GPX) gene family and their response to abiotic stress in cucumber

(2018) Yong Zhou et al.   3 Biotech

Reactive oxygen species in plant development

(2018) Amna Mhamdi et al.   DEVELOPMENT

BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics

(2017) Robert M Waterhouse et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Glutathione Peroxidase Gene Family in Gossypium hirsutum: Genome-Wide Identification, Classification, Gene Expression and Functional Analysis

(2017) Mingyang Chen et al.   Scientific Reports

Genome-Wide Identification and Transcriptional Expression Analysis of Cucumber Superoxide Dismutase (SOD) Family in Response to Various Abiotic Stresses

(2017) Yong Zhou et al.   International Journal of Genomics

Complex heatmaps reveal patterns and correlations in multidimensional genomic data

(2016) Zuguang Gu et al.   BIOINFORMATICS

The catalase gene family in cucumber: genome-wide identification and organization

(2016) Lifang Hu et al.   GENETICS AND MOLECULAR BIOLOGY

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Near-optimal probabilistic RNA-seq quantification

(2016) Nicolas L Bray et al.   NATURE BIOTECHNOLOGY

Evolution of gene duplication in plants

(2016) Nicholas Panchy et al.   PLANT PHYSIOLOGY

Identification and Comparative Analysis of H2O2-Scavenging Enzymes (Ascorbate Peroxidase and Glutathione Peroxidase) in Selected Plants Employing Bioinformatics Approaches

(2016) Ibrahim I. Ozyigit et al.   Frontiers in Plant Science

Plant glutathione peroxidases: Emerging role of the antioxidant enzymes in plant development and stress responses

(2015) Krisztina Bela et al.   JOURNAL OF PLANT PHYSIOLOGY

Single-molecule sequencing of the desiccation-tolerant grass Oropetium thomaeum

(2015) Robert VanBuren et al.   NATURE

Genome-Wide Analysis of Alternative Splicing during Development and Drought Stress in Maize

(2015) Shawn R. Thatcher et al.   PLANT PHYSIOLOGY

The resurrection genome ofBoea hygrometrica: A blueprint for survival of dehydration

(2015) Lihong Xiao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide distribution of superoxide dismutase (SOD) gene families inSorghum bicolor

(2015) Ertuğrul FİLİZ et al.   TURKISH JOURNAL OF BIOLOGY

An Arabidopsis PWI and RRM motif-containing protein is critical for pre-mRNA splicing and ABA responses

(2015) Xiangqiang Zhan et al.   Nature Communications

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

Developmental stage-dependent differential gene expression of superoxide dismutase isoenzymes and their localization and physical interaction network in rice (Oryza sativa L.)

(2013) Krishna Nath et al.   Genes & Genomics

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data

(2012) Evguenia Kopylova et al.   BIOINFORMATICS

Molecular mechanisms of desiccation tolerance in the resurrection glacial relic Haberlea rhodopensis

(2012) Tsanko S. Gechev et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Molecular mechanisms of desiccation tolerance in resurrection plants

(2012) Tsanko S. Gechev et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Plant responses to stresses: role of ascorbate peroxidase in the antioxidant protection

(2012) Andréia Caverzan et al.   GENETICS AND MOLECULAR BIOLOGY

Functions of microRNAs in plant stress responses

(2012) Ramanjulu Sunkar et al.   TRENDS IN PLANT SCIENCE

Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing

(2011) Tianzuo Wang et al.   BMC GENOMICS

Superoxide dismutases: Ancient enzymes and new insights

(2011) Anne-Frances Miller   FEBS LETTERS

Interactions between enhancer of rudimentary and Notch and deltex reveal a regulatory function of enhancer of rudimentary in the Notch signaling pathway in Drosophila melanogaster

(2011) Stuart I. Tsubota et al.   FLY

psRNATarget: a plant small RNA target analysis server

(2011) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

A subcellular localization compendium of hydrogen peroxide-induced proteins

(2011) ANNELIES INZÉ et al.   PLANT CELL AND ENVIRONMENT

The Selaginella Genome Identifies Genetic Changes Associated with the Evolution of Vascular Plants

(2011) J. A. Banks et al.   SCIENCE

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Catalase function in plants: a focus on Arabidopsis mutants as stress-mimic models

(2010) Amna Mhamdi et al.   JOURNAL OF EXPERIMENTAL BOTANY

Desiccation-induced physiological and biochemical changes in resurrection plant, Selaginella bryopteris

(2010) Vivek Pandey et al.   JOURNAL OF PLANT PHYSIOLOGY

Identification and analysis of seven H2O2-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)

(2010) Tian Li et al.   NUCLEIC ACIDS RESEARCH

Effect of plant growth promoting Pseudomonas spp. on compatible solutes, antioxidant status and plant growth of maize under drought stress

(2010) V. Sandhya et al.   PLANT GROWTH REGULATION

Reactive oxygen species and antioxidant machinery in abiotic stress tolerance in crop plants

(2010) Sarvajeet Singh Gill et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Exogenous paraquat changes antioxidant enzyme activities and lipid peroxidation in drought-stressed cucumber leaves

(2009) Zhong-Jing Liu et al.   SCIENTIA HORTICULTURAE

Evolution of Stress-Regulated Gene Expression in Duplicate Genes of Arabidopsis thaliana

(2009) Cheng Zou et al.   PLoS Genetics

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Importance of Lineage-Specific Expansion of Plant Tandem Duplicates in the Adaptive Response to Environmental Stimuli

(2008) K. Hanada et al.   PLANT PHYSIOLOGY