Local features determine Ty3 targeting frequency at RNA polymerase III transcription start sites
Published 2019 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Local features determine Ty3 targeting frequency at RNA polymerase III transcription start sites
Authors
Keywords
-
Journal
GENOME RESEARCH
Volume 29, Issue 8, Pages 1298-1309
Publisher
Cold Spring Harbor Laboratory
Online
2019-06-28
DOI
10.1101/gr.240861.118
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Cellular and molecular mechanisms of HIV-1 integration targeting
- (2018) Alan N. Engelman et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- Transposable elements: genome innovation, chromosome diversity, and centromere conflict
- (2018) Savannah J. Klein et al. CHROMOSOME RESEARCH
- Horizontal acquisition of transposable elements and viral sequences: patterns and consequences
- (2018) Clément Gilbert et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- The yeast Ty1 retrotransposon requires components of the nuclear pore complex for transcription and genomic integration
- (2018) Savrina Manhas et al. NUCLEIC ACIDS RESEARCH
- Human Endogenous Retroviruses in Neurological Diseases
- (2018) Patrick Küry et al. TRENDS IN MOLECULAR MEDICINE
- Retrotransposon targeting to RNA polymerase III-transcribed genes
- (2018) Stephanie Cheung et al. Mobile DNA
- Capsid-CPSF6 Interaction Licenses Nuclear HIV-1 Trafficking to Sites of Viral DNA Integration
- (2018) Vasudevan Achuthan et al. Cell Host & Microbe
- Integration site selection by retroviruses and transposable elements in eukaryotes
- (2017) Tania Sultana et al. NATURE REVIEWS GENETICS
- Retroviral DNA Integration
- (2016) Paul Lesbats et al. CHEMICAL REVIEWS
- Cryo-EM reveals a novel octameric integrase structure for betaretroviral intasome function
- (2016) Allison Ballandras-Colas et al. NATURE
- DNA minicircles clarify the specific role of DNA structure on retroviral integration
- (2016) Marco Pasi et al. NUCLEIC ACIDS RESEARCH
- Sleeping Beauty transposase structure allows rational design of hyperactive variants for genetic engineering
- (2016) Franka Voigt et al. Nature Communications
- Retroviruses integrate into a shared, non-palindromic DNA motif
- (2016) Paul D. W. Kirk et al. Nature Microbiology
- Sequence Assembly of Yarrowia lipolytica Strain W29/CLIB89 Shows Transposable Element Diversity
- (2016) Christophe Magnan et al. PLoS One
- Viral Vectors for Gene Therapy: Translational and Clinical Outlook
- (2015) Melissa A. Kotterman et al. Annual Review of Biomedical Engineering
- Structural basis for retroviral integration into nucleosomes
- (2015) Daniel P. Maskell et al. NATURE
- Molecular structures of unbound and transcribing RNA polymerase III
- (2015) Niklas A. Hoffmann et al. NATURE
- Architecture of TFIIIC and its role in RNA polymerase III pre-initiation complex assembly
- (2015) Gary Male et al. Nature Communications
- A long terminal repeat retrotransposon of Schizosaccharomyces japonicus integrates upstream of RNA pol III transcribed genes
- (2015) Yabin Guo et al. Mobile DNA
- Role of DNA sequence based structural features of promoters in transcription initiation and gene expression
- (2014) Manju Bansal et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Heavy transcription of yeast genes correlates with differential loss of histone H2B relative to H4 and queued RNA polymerases
- (2014) Hope A. Cole et al. NUCLEIC ACIDS RESEARCH
- Altering murine leukemia virus integration through disruption of the integrase and BET protein family interaction
- (2014) Sriram Aiyer et al. NUCLEIC ACIDS RESEARCH
- Molecular mechanisms of retroviral integration site selection
- (2014) Mamuka Kvaratskhelia et al. NUCLEIC ACIDS RESEARCH
- Serial number tagging reveals a prominent sequence preference of retrotransposon integration
- (2014) Atreyi Ghatak Chatterjee et al. NUCLEIC ACIDS RESEARCH
- Integrase residues that determine nucleotide preferences at sites of HIV-1 integration: implications for the mechanism of target DNA binding
- (2014) Erik Serrao et al. NUCLEIC ACIDS RESEARCH
- A unique nucleosome arrangement, maintained actively by chromatin remodelers facilitates transcription of yeast tRNA genes
- (2013) Yatendra Kumar et al. BMC GENOMICS
- Mot1 Redistributes TBP from TATA-Containing to TATA-Less Promoters
- (2013) G. E. Zentner et al. MOLECULAR AND CELLULAR BIOLOGY
- High-resolution mapping of transcription factor binding sites on native chromatin
- (2013) Sivakanthan Kasinathan et al. NATURE METHODS
- Regulation of nucleosome dynamics by histone modifications
- (2013) Gabriel E Zentner et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Global ‘bootprinting’ reveals the elastic architecture of the yeast TFIIIB–TFIIIC transcription complex in vivo
- (2013) V. Nagarajavel et al. NUCLEIC ACIDS RESEARCH
- Structural basis for high-affinity binding of LEDGF PWWP to mononucleosomes
- (2013) Jocelyn O. Eidahl et al. NUCLEIC ACIDS RESEARCH
- Epigenetics in Saccharomyces cerevisiae
- (2013) M. Grunstein et al. Cold Spring Harbor Perspectives in Biology
- The BET Family of Proteins Targets Moloney Murine Leukemia Virus Integration near Transcription Start Sites
- (2013) Jan De Rijck et al. Cell Reports
- ISWI and CHD Chromatin Remodelers Bind Promoters but Act in Gene Bodies
- (2013) Gabriel E. Zentner et al. PLoS Genetics
- Retrotransposon profiling of RNA polymerase III initiation sites
- (2012) X. Qi et al. GENOME RESEARCH
- A nucleosomal surface defines an integration hotspot for the Saccharomyces cerevisiae Ty1 retrotransposon
- (2012) J. A. Baller et al. GENOME RESEARCH
- In VitroTargeting of Strand Transfer by the Ty3 Retroelement Integrase
- (2012) Xiaojie Qi et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- A map of nucleosome positions in yeast at base-pair resolution
- (2012) Kristin Brogaard et al. NATURE
- Identifying ChIP-seq enrichment using MACS
- (2012) Jianxing Feng et al. Nature Protocols
- RNA polymerase III subunit architecture and implications for open promoter complex formation
- (2012) C.-C. Wu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Psip1/Ledgf p52 Binds Methylated Histone H3K36 and Splicing Factors and Contributes to the Regulation of Alternative Splicing
- (2012) Madapura M. Pradeepa et al. PLoS Genetics
- pROC: an open-source package for R and S+ to analyze and compare ROC curves
- (2011) Xavier Robin et al. BMC BIOINFORMATICS
- Gammaretroviral Integration into Nucleosomal Target DNA In Vivo
- (2011) S. L. Roth et al. JOURNAL OF VIROLOGY
- A common sequence motif involved in selection of transcription start sites of Arabidopsis and budding yeast tRNA genes
- (2010) Yasushi Yukawa et al. GENOMICS
- A three-dimensional model of the yeast genome
- (2010) Zhijun Duan et al. NATURE
- Retroviral intasome assembly and inhibition of DNA strand transfer
- (2010) Stephen Hare et al. NATURE
- The mechanism of retroviral integration from X-ray structures of its key intermediates
- (2010) Goedele N. Maertens et al. NATURE
- Upstream curved sequences in E. coli are related to the regulation of transcription initiation
- (2009) Tamar Nov Klaiman et al. COMPUTATIONAL BIOLOGY AND CHEMISTRY
- Circos: An information aesthetic for comparative genomics
- (2009) M. Krzywinski et al. GENOME RESEARCH
- MEME SUITE: tools for motif discovery and searching
- (2009) T. L. Bailey et al. NUCLEIC ACIDS RESEARCH
- Transcription Factor Binding Sites Are Genetic Determinants of Retroviral Integration in the Human Genome
- (2009) Barbara Felice et al. PLoS One
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Chromodomains direct integration of retrotransposons to heterochromatin
- (2008) X. Gao et al. GENOME RESEARCH
- A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome
- (2008) T. N. Mavrich et al. GENOME RESEARCH
- Model-based Analysis of ChIP-Seq (MACS)
- (2008) Yong Zhang et al. GENOME BIOLOGY
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now