Local features determine Ty3 targeting frequency at RNA polymerase III transcription start sites
出版年份 2019 全文链接
标题
Local features determine Ty3 targeting frequency at RNA polymerase III transcription start sites
作者
关键词
-
出版物
GENOME RESEARCH
Volume 29, Issue 8, Pages 1298-1309
出版商
Cold Spring Harbor Laboratory
发表日期
2019-06-28
DOI
10.1101/gr.240861.118
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Cellular and molecular mechanisms of HIV-1 integration targeting
- (2018) Alan N. Engelman et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- Transposable elements: genome innovation, chromosome diversity, and centromere conflict
- (2018) Savannah J. Klein et al. CHROMOSOME RESEARCH
- Horizontal acquisition of transposable elements and viral sequences: patterns and consequences
- (2018) Clément Gilbert et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- The yeast Ty1 retrotransposon requires components of the nuclear pore complex for transcription and genomic integration
- (2018) Savrina Manhas et al. NUCLEIC ACIDS RESEARCH
- Human Endogenous Retroviruses in Neurological Diseases
- (2018) Patrick Küry et al. TRENDS IN MOLECULAR MEDICINE
- Retrotransposon targeting to RNA polymerase III-transcribed genes
- (2018) Stephanie Cheung et al. Mobile DNA
- Capsid-CPSF6 Interaction Licenses Nuclear HIV-1 Trafficking to Sites of Viral DNA Integration
- (2018) Vasudevan Achuthan et al. Cell Host & Microbe
- Integration site selection by retroviruses and transposable elements in eukaryotes
- (2017) Tania Sultana et al. NATURE REVIEWS GENETICS
- Retroviral DNA Integration
- (2016) Paul Lesbats et al. CHEMICAL REVIEWS
- Cryo-EM reveals a novel octameric integrase structure for betaretroviral intasome function
- (2016) Allison Ballandras-Colas et al. NATURE
- DNA minicircles clarify the specific role of DNA structure on retroviral integration
- (2016) Marco Pasi et al. NUCLEIC ACIDS RESEARCH
- Sleeping Beauty transposase structure allows rational design of hyperactive variants for genetic engineering
- (2016) Franka Voigt et al. Nature Communications
- Retroviruses integrate into a shared, non-palindromic DNA motif
- (2016) Paul D. W. Kirk et al. Nature Microbiology
- Sequence Assembly of Yarrowia lipolytica Strain W29/CLIB89 Shows Transposable Element Diversity
- (2016) Christophe Magnan et al. PLoS One
- Viral Vectors for Gene Therapy: Translational and Clinical Outlook
- (2015) Melissa A. Kotterman et al. Annual Review of Biomedical Engineering
- Structural basis for retroviral integration into nucleosomes
- (2015) Daniel P. Maskell et al. NATURE
- Molecular structures of unbound and transcribing RNA polymerase III
- (2015) Niklas A. Hoffmann et al. NATURE
- Architecture of TFIIIC and its role in RNA polymerase III pre-initiation complex assembly
- (2015) Gary Male et al. Nature Communications
- A long terminal repeat retrotransposon of Schizosaccharomyces japonicus integrates upstream of RNA pol III transcribed genes
- (2015) Yabin Guo et al. Mobile DNA
- Role of DNA sequence based structural features of promoters in transcription initiation and gene expression
- (2014) Manju Bansal et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Heavy transcription of yeast genes correlates with differential loss of histone H2B relative to H4 and queued RNA polymerases
- (2014) Hope A. Cole et al. NUCLEIC ACIDS RESEARCH
- Altering murine leukemia virus integration through disruption of the integrase and BET protein family interaction
- (2014) Sriram Aiyer et al. NUCLEIC ACIDS RESEARCH
- Molecular mechanisms of retroviral integration site selection
- (2014) Mamuka Kvaratskhelia et al. NUCLEIC ACIDS RESEARCH
- Serial number tagging reveals a prominent sequence preference of retrotransposon integration
- (2014) Atreyi Ghatak Chatterjee et al. NUCLEIC ACIDS RESEARCH
- Integrase residues that determine nucleotide preferences at sites of HIV-1 integration: implications for the mechanism of target DNA binding
- (2014) Erik Serrao et al. NUCLEIC ACIDS RESEARCH
- A unique nucleosome arrangement, maintained actively by chromatin remodelers facilitates transcription of yeast tRNA genes
- (2013) Yatendra Kumar et al. BMC GENOMICS
- Mot1 Redistributes TBP from TATA-Containing to TATA-Less Promoters
- (2013) G. E. Zentner et al. MOLECULAR AND CELLULAR BIOLOGY
- High-resolution mapping of transcription factor binding sites on native chromatin
- (2013) Sivakanthan Kasinathan et al. NATURE METHODS
- Regulation of nucleosome dynamics by histone modifications
- (2013) Gabriel E Zentner et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Global ‘bootprinting’ reveals the elastic architecture of the yeast TFIIIB–TFIIIC transcription complex in vivo
- (2013) V. Nagarajavel et al. NUCLEIC ACIDS RESEARCH
- Structural basis for high-affinity binding of LEDGF PWWP to mononucleosomes
- (2013) Jocelyn O. Eidahl et al. NUCLEIC ACIDS RESEARCH
- Epigenetics in Saccharomyces cerevisiae
- (2013) M. Grunstein et al. Cold Spring Harbor Perspectives in Biology
- The BET Family of Proteins Targets Moloney Murine Leukemia Virus Integration near Transcription Start Sites
- (2013) Jan De Rijck et al. Cell Reports
- ISWI and CHD Chromatin Remodelers Bind Promoters but Act in Gene Bodies
- (2013) Gabriel E. Zentner et al. PLoS Genetics
- Retrotransposon profiling of RNA polymerase III initiation sites
- (2012) X. Qi et al. GENOME RESEARCH
- A nucleosomal surface defines an integration hotspot for the Saccharomyces cerevisiae Ty1 retrotransposon
- (2012) J. A. Baller et al. GENOME RESEARCH
- In VitroTargeting of Strand Transfer by the Ty3 Retroelement Integrase
- (2012) Xiaojie Qi et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- A map of nucleosome positions in yeast at base-pair resolution
- (2012) Kristin Brogaard et al. NATURE
- Identifying ChIP-seq enrichment using MACS
- (2012) Jianxing Feng et al. Nature Protocols
- RNA polymerase III subunit architecture and implications for open promoter complex formation
- (2012) C.-C. Wu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Psip1/Ledgf p52 Binds Methylated Histone H3K36 and Splicing Factors and Contributes to the Regulation of Alternative Splicing
- (2012) Madapura M. Pradeepa et al. PLoS Genetics
- pROC: an open-source package for R and S+ to analyze and compare ROC curves
- (2011) Xavier Robin et al. BMC BIOINFORMATICS
- Gammaretroviral Integration into Nucleosomal Target DNA In Vivo
- (2011) S. L. Roth et al. JOURNAL OF VIROLOGY
- A common sequence motif involved in selection of transcription start sites of Arabidopsis and budding yeast tRNA genes
- (2010) Yasushi Yukawa et al. GENOMICS
- A three-dimensional model of the yeast genome
- (2010) Zhijun Duan et al. NATURE
- Retroviral intasome assembly and inhibition of DNA strand transfer
- (2010) Stephen Hare et al. NATURE
- The mechanism of retroviral integration from X-ray structures of its key intermediates
- (2010) Goedele N. Maertens et al. NATURE
- Upstream curved sequences in E. coli are related to the regulation of transcription initiation
- (2009) Tamar Nov Klaiman et al. COMPUTATIONAL BIOLOGY AND CHEMISTRY
- Circos: An information aesthetic for comparative genomics
- (2009) M. Krzywinski et al. GENOME RESEARCH
- MEME SUITE: tools for motif discovery and searching
- (2009) T. L. Bailey et al. NUCLEIC ACIDS RESEARCH
- Transcription Factor Binding Sites Are Genetic Determinants of Retroviral Integration in the Human Genome
- (2009) Barbara Felice et al. PLoS One
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Chromodomains direct integration of retrotransposons to heterochromatin
- (2008) X. Gao et al. GENOME RESEARCH
- A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome
- (2008) T. N. Mavrich et al. GENOME RESEARCH
- Model-based Analysis of ChIP-Seq (MACS)
- (2008) Yong Zhang et al. GENOME BIOLOGY
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started