The Ulp2 SUMO protease promotes transcription elongation through regulation of histone sumoylation

Binding to Small Ubiquitin-like MOdifier and the nucleolar protein Csm1 regulates substrate specificity of the Ulp2 protease

(2018) Claudio Ponte de Albuquerque et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Distinct adaptive mechanisms drive recovery from aneuploidy caused by loss of the Ulp2 SUMO protease

(2018) Hong-Yeoul Ryu et al.   Nature Communications

Recruitment of a SUMO isopeptidase to rDNA stabilizes silencing complexes by opposing SUMO targeted ubiquitin ligase activity

(2017) Jason Liang et al.   GENES & DEVELOPMENT

SAGA Is a General Cofactor for RNA Polymerase II Transcription

(2017) Tiago Baptista et al.   MOLECULAR CELL

Loss of the SUMO protease Ulp2 triggers a specific multichromosome aneuploidy

(2016) Hong-Yeoul Ryu et al.   GENES & DEVELOPMENT

The Histone Modification Domain of Paf1 Complex Subunit Rtf1 Directly Stimulates H2B Ubiquitylation through an Interaction with Rad6

(2016) S. Branden Van Oss et al.   MOLECULAR CELL

A comprehensive compilation of SUMO proteomics

(2016) Ivo A. Hendriks et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

SUMO-regulated transcription: Challenging the dogma

(2015) Pierre Chymkowitch et al.   BIOESSAYS

Modifications of RNA polymerase II CTD: Connections to the histone code and cellular function

(2015) Rakesh Srivastava et al.   BIOTECHNOLOGY ADVANCES

Sumoylation of Rap1 mediates the recruitment of TFIID to promote transcription of ribosomal protein genes

(2015) Pierre Chymkowitch et al.   GENOME RESEARCH

Sumoylation controls the timing of Tup1-mediated transcriptional deactivation

(2015) Chong Han Ng et al.   Nature Communications

Yeast histone H3 lysine 4 demethylase Jhd2 regulates mitotic ribosomal DNA condensation

(2014) Hong-Yeoul Ryu et al.   BMC BIOLOGY

The SAGA coactivator complex acts on the whole transcribed genome and is required for RNA polymerase II transcription

(2014) Jacques Bonnet et al.   GENES & DEVELOPMENT

A PWWP Domain-Containing Protein Targets the NuA3 Acetyltransferase Complex via Histone H3 Lysine 36 trimethylation to Coordinate Transcriptional Elongation at Coding Regions

(2014) Tonya M. Gilbert et al.   MOLECULAR & CELLULAR PROTEOMICS

Uncovering global SUMOylation signaling networks in a site-specific manner

(2014) Ivo A Hendriks et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

deepTools: a flexible platform for exploring deep-sequencing data

(2014) Fidel Ramírez et al.   NUCLEIC ACIDS RESEARCH

Sumoylation: A Regulatory Protein Modification in Health and Disease

(2013) Annette Flotho et al.   Annual Review of Biochemistry

A Conserved Protein with AN1 Zinc Finger and Ubiquitin-like Domains Modulates Cdc48 (p97) Function in the Ubiquitin-Proteasome Pathway

(2013) Bebiana Sá-Moura et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Nuclear Pore Regulates GAL1 Gene Transcription by Controlling the Localization of the SUMO Protease Ulp1

(2013) Lorane Texari et al.   MOLECULAR CELL

Identifying ChIP-seq enrichment using MACS

(2012) Jianxing Feng et al.   Nature Protocols

Function and regulation of SUMO proteases

(2012) Christopher M. Hickey et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Updating the RNA polymerase CTD code: adding gene-specific layers

(2012) Sylvain Egloff et al.   TRENDS IN GENETICS

H2B ubiquitylation is part of chromatin architecture that marks exon-intron structure in budding yeast

(2011) Grace S Shieh et al.   BMC GENOMICS

SUMO functions in constitutive transcription and during activation of inducible genes in yeast

(2010) E. Rosonina et al.   GENES & DEVELOPMENT

Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

(2010) Sven Heinz et al.   MOLECULAR CELL

Extracellular Signal-Regulated Kinase Mitogen-Activated Protein Kinase Signaling Initiates a Dynamic Interplay between Sumoylation and Ubiquitination To Regulate the Activity of the Transcriptional Activator PEA3

(2009) B. Guo et al.   MOLECULAR AND CELLULAR BIOLOGY

Essential Role of Nuclear Localization for Yeast Ulp2 SUMO Protease Function

(2009) Mary B. Kroetz et al.   MOLECULAR BIOLOGY OF THE CELL

Chromosome-wide Rad51 Spreading and SUMO-H2A.Z-Dependent Chromosome Fixation in Response to a Persistent DNA Double-Strand Break

(2009) Marian Kalocsay et al.   MOLECULAR CELL

Ubiquitination of histone H2B regulates chromatin dynamics by enhancing nucleosome stability

(2009) M. B. Chandrasekharan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Small epitope-linker modules for PCR-based C-terminal tagging inSaccharomyces cerevisiae

(2009) Minoru Funakoshi et al.   YEAST

In human pachytene spermatocytes, SUMO protein is restricted to the constitutive heterochromatin

(2008) Catherine Metzler-Guillemain et al.   CHROMOSOME RESEARCH

Analyzing real-time PCR data by the comparative CT method

(2008) Thomas D Schmittgen et al.   Nature Protocols