Archaeal community in a human-disturbed watershed in southeast China: diversity, distribution, and responses to environmental changes

Environmental rather than spatial factors structure bacterioplankton communities in shallow lakes along a > 6000 km latitudinal gradient in South America

(2015) Caroline Souffreau et al.   ENVIRONMENTAL MICROBIOLOGY

Comprehensive Evaluation of Antibiotics Emission and Fate in the River Basins of China: Source Analysis, Multimedia Modeling, and Linkage to Bacterial Resistance

(2015) Qian-Qian Zhang et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Biogeography of Planktonic and Benthic Archaeal Communities in a Subtropical Eutrophic Estuary of China

(2015) Anyi Hu et al.   MICROBIAL ECOLOGY

Temporal Dynamics of Active Prokaryotic Nitrifiers and Archaeal Communities from River to Sea

(2015) Mylène Hugoni et al.   MICROBIAL ECOLOGY

Genomic and proteomic characterization of “CandidatusNitrosopelagicus brevis”: An ammonia-oxidizing archaeon from the open ocean

(2015) Alyson E. Santoro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Species sorting and seasonal dynamics primarily shape bacterial communities in the Upper Mississippi River

(2015) Christopher Staley et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Changes in bacterial and eukaryotic communities during sewage decomposition in Mississippi river water

(2015) Asja Korajkic et al.   WATER RESEARCH

Temporal dynamics of activeArchaeain oxygen-depleted zones of two deep lakes

(2015) Mylène Hugoni et al.   Environmental Microbiology Reports

Distribution of sediment bacterial and archaeal communities in plateau freshwater lakes

(2014) Jingxu Zhang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Paradox reconsidered: Methane oversaturation in well-oxygenated lake waters

(2014) Kam W. Tang et al.   LIMNOLOGY AND OCEANOGRAPHY

Community structure and distribution of planktonic ammonia-oxidizing archaea and bacteria in the Dongjiang River, China

(2014) Wei Sun et al.   RESEARCH IN MICROBIOLOGY

Oxic water column methanogenesis as a major component of aquatic CH4 fluxes

(2014) Matthew J Bogard et al.   Nature Communications

Thaumarchaeotal Signature Gene Distribution in Sediments of the Northern South China Sea: an Indicator of the Metabolic Intersection of the Marine Carbon, Nitrogen, and Phosphorus Cycles?

(2013) Hongyue Dang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Spatial Distribution and Factors Shaping the Niche Segregation of Ammonia-Oxidizing Microorganisms in the Qiantang River, China

(2013) Shuai Liu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Using high-throughput sequencing to assess the impacts of treated and untreated wastewater discharge on prokaryotic communities in an urban river

(2013) Yaohui Bai et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Ecology and characteristics of methanogenic archaea in animals and humans

(2013) Suwat Saengkerdsub et al.   CRITICAL REVIEWS IN MICROBIOLOGY

Spatio-temporal changes in the structure of archaeal communities in two deep freshwater lakes

(2013) Lyria Berdjeb et al.   FEMS MICROBIOLOGY ECOLOGY

Seasonal variation in the metratranscriptomes of a Thaumarchaeota population from SE USA coastal waters

(2013) James T Hollibaugh et al.   ISME Journal

Phylogenetic beta diversity in bacterial assemblages across ecosystems: deterministic versus stochastic processes

(2013) Jianjun Wang et al.   ISME Journal

Effects of connectivity, dispersal directionality and functional traits on the metacommunity structure of river benthic diatoms

(2013) Jing Liu et al.   JOURNAL OF BIOGEOGRAPHY

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

GenGIS 2: Geospatial Analysis of Traditional and Genetic Biodiversity, with New Gradient Algorithms and an Extensible Plugin Framework

(2013) Donovan H. Parks et al.   PLoS One

Response of bacterial communities to environmental changes in a mesoscale subtropical watershed, Southeast China

(2013) Anyi Hu et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Local and regional influences over soil microbial metacommunities in the Transantarctic Mountains

(2013) Eric R. Sokol et al.   Ecosphere

Physiology and Diversity of Ammonia-Oxidizing Archaea

(2012) David A. Stahl et al.   Annual Review of Microbiology

Partitioning ofThaumarchaeotapopulations along environmental gradients in high mountain lakes

(2012) Jean-Christophe Auguet et al.   FEMS MICROBIOLOGY ECOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Nutrient enrichment and N:P ratio decline in a coastal bay–river system in southeast China: The need for a dual nutrient (N and P) management strategy

(2012) Nengwang Chen et al.   OCEAN & COASTAL MANAGEMENT

Archaea in Organic-Lean and Organic-Rich Marine Subsurface Sediments: An Environmental Gradient Reflected in Distinct Phylogenetic Lineages

(2012) Alan M. Durbin et al.   Frontiers in Microbiology

Fundamentals of Microbial Community Resistance and Resilience

(2012) Ashley Shade et al.   Frontiers in Microbiology

Seasonal Changes of Freshwater Ammonia-Oxidizing Archaeal Assemblages and Nitrogen Species in Oligotrophic Alpine Lakes

(2011) Jean-Christophe Auguet et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Detecting the Dynamic Linkage between Landscape Characteristics and Water Quality in a Subtropical Coastal Watershed, Southeast China

(2011) Jinliang Huang et al.   ENVIRONMENTAL MANAGEMENT

Genetic diversity patterns of microbial communities in a subtropical riverine ecosystem (Jiulong River, southeast China)

(2011) Lemian Liu et al.   HYDROBIOLOGIA

Niche specialization of terrestrial archaeal ammonia oxidizers

(2011) C. Gubry-Rangin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial methane production in oxygenated water column of an oligotrophic lake

(2011) H.-P. Grossart et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diversity of microbial plankton across the Three Gorges Dam of the Yangtze River, China

(2011) Shang Wang et al.   Geoscience Frontiers

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Environmental distribution of prokaryotic taxa

(2010) Javier Tamames et al.   BMC MICROBIOLOGY

SAM: a comprehensive application for Spatial Analysis in Macroecology

(2010) Thiago F. Rangel et al.   ECOGRAPHY

BIPES, a cost-effective high-throughput method for assessing microbial diversity

(2010) Hong-Wei Zhou et al.   ISME Journal

A real-time qPCR assay for the detection of the nifH gene of Methanobrevibacter smithii, a potential indicator of sewage pollution

(2010) C. Johnston et al.   JOURNAL OF APPLIED MICROBIOLOGY

Characterization of Archaeal Community in Contaminated and Uncontaminated Surface Stream Sediments

(2010) Iris Porat et al.   MICROBIAL ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea

(2010) C. B. Walker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Distinct gene set in two different lineages of ammonia-oxidizing archaea supports the phylum Thaumarchaeota

(2010) Anja Spang et al.   TRENDS IN MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Diversity of Archaea and detection of crenarchaeotal amoA genes in the rivers Rhine and Têt

(2009) L Herfort et al.   AQUATIC MICROBIAL ECOLOGY

Response of Archaeal Community Structure to Environmental Changes in Lakes on the Tibetan Plateau, Northwestern China

(2009) Hongchen Jiang et al.   GEOMICROBIOLOGY JOURNAL

Unique archaeal assemblages in the Arctic Ocean unveiled by massively parallel tag sequencing

(2009) Pierre E Galand et al.   ISME Journal

Global ecological patterns in uncultured Archaea

(2009) Jean-Christophe Auguet et al.   ISME Journal

Metabolic, Phylogenetic, and Ecological Diversity of the Methanogenic Archaea

(2008) Yuchen Liu et al.   Annals of the New York Academy of Sciences

Archaea Dominate the Ammonia-Oxidizing Community in the Rhizosphere of the Freshwater Macrophyte Littorella uniflora

(2008) M. Herrmann et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

FORWARD SELECTION OF EXPLANATORY VARIABLES

(2008) F. Guillaume Blanchet et al.   ECOLOGY

A hotspot for cold crenarchaeota in the neuston of high mountain lakes

(2008) Jean-Christophe Auguet et al.   ENVIRONMENTAL MICROBIOLOGY

Mesophilic crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota

(2008) Céline Brochier-Armanet et al.   NATURE REVIEWS MICROBIOLOGY

Resistance, resilience, and redundancy in microbial communities

(2008) S. D. Allison et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA