Assessment of the impact of different fecal storage protocols on the microbiota diversity and composition: a pilot study

VMG II transport medium stabilises oral microbiome samples for Next-Generation Sequencing

(2018) Christina J. Adler et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Optimization of fecal sample processing for microbiome study — The journey from bathroom to bench

(2018) Wei-Kai Wu et al.   JOURNAL OF THE FORMOSAN MEDICAL ASSOCIATION

Influence of fecal collection conditions and 16S rRNA gene sequencing at two centers on human gut microbiota analysis

(2018) Jocelyn Sietsma Penington et al.   Scientific Reports

A novel affordable reagent for room temperature storage and transport of fecal samples for metagenomic analyses

(2018) Mo Han et al.   Microbiome

Preservation of bacterial DNA in 10-year-old guaiac FOBT cards and FIT tubes

(2017) Matheus Couto Furtado Albuquerque et al.   JOURNAL OF CLINICAL PATHOLOGY

Ionic liquid-based reagents improve the stability of midterm fecal sample storage

(2017) Lilan Hao et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Assessment of variation in microbial community amplicon sequencing by the Microbiome Quality Control (MBQC) project consortium

(2017) Rashmi Sinha et al.   NATURE BIOTECHNOLOGY

Collection of non-meconium stool on fecal occult blood cards is an effective method for fecal microbiota studies in infants

(2017) Wendy S.W. Wong et al.   Microbiome

Compositional analysis: a valid approach to analyze microbiome high-throughput sequencing data

(2016) Gregory B. Gloor et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Comparison of Collection Methods for Fecal Samples for Discovery Metabolomics in Epidemiologic Studies

(2016) E. Loftfield et al.   CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION

Examining the potential use and long-term stability of guaiac faecal occult blood test cards for microbial DNA 16S rRNA sequencing

(2016) Morag Taylor et al.   JOURNAL OF CLINICAL PATHOLOGY

The healthy human microbiome

(2016) Jason Lloyd-Price et al.   Genome Medicine

Preservation Methods Differ in Fecal Microbiome Stability, Affecting Suitability for Field Studies

(2016) Se Jin Song et al.   mSystems

Collecting Fecal Samples for Microbiome Analyses in Epidemiology Studies

(2015) R. Sinha et al.   CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION

Personalized Nutrition by Prediction of Glycemic Responses

(2015) David Zeevi et al.   CELL

zCompositions — R package for multivariate imputation of left-censored data under a compositional approach

(2015) Javier Palarea-Albaladejo et al.   CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS

The gut microbiota and host health: a new clinical frontier

(2015) Julian R Marchesi et al.   GUT

The Effects of Freezing on Faecal Microbiota as Determined Using MiSeq Sequencing and Culture-Based Investigations

(2015) Fiona Fouhy et al.   PLoS One

Relating the metatranscriptome and metagenome of the human gut

(2014) E. A. Franzosa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Defining a Healthy Human Gut Microbiome: Current Concepts, Future Directions, and Clinical Applications

(2012) Fredrik Bäckhed et al.   Cell Host & Microbe

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Chapter 12: Human Microbiome Analysis

(2012) Xochitl C. Morgan et al.   PLoS Computational Biology

Population-Based Cohort Studies: Still Relevant?

(2011) Paul Sorlie et al.   JOURNAL OF THE AMERICAN COLLEGE OF CARDIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Molecular characterization of Legionella pneumophila-induced interleukin-8 expression in T cells

(2010) Reika Takamatsu et al.   BMC MICROBIOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Repeatability and Reproducibility in Proteomic Identifications by Liquid Chromatography−Tandem Mass Spectrometry

(2009) David L. Tabb et al.   JOURNAL OF PROTEOME RESEARCH