Helitron distribution in Brassicaceae and whole Genome Helitron density as a character for distinguishing plant species
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Title
Helitron distribution in Brassicaceae and whole Genome Helitron density as a character for distinguishing plant species
Authors
Keywords
Transposable element, Plant classification, Multivariate analysis, Genomic evolution, Bioinformatics
Journal
BMC BIOINFORMATICS
Volume 20, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2019-06-24
DOI
10.1186/s12859-019-2945-8
References
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Note: Only part of the references are listed.- The genomes and transposable elements in plants: are they friends or foes?
- (2017) Nam-Soo Kim Genes & Genomics
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- (2016) BOTANICAL JOURNAL OF THE LINNEAN SOCIETY
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- (2016) Ivana Grabundzija et al. Nature Communications
- Helitron-like transposons contributed to the mating system transition from out-crossing to self-fertilizing in polyploid Brassica napus L.
- (2016) Changbin Gao et al. Scientific Reports
- FLOR-ID: an interactive database of flowering-time gene networks inArabidopsis thaliana
- (2015) Frédéric Bouché et al. NUCLEIC ACIDS RESEARCH
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- jvenn: an interactive Venn diagram viewer
- (2014) Philippe Bardou et al. BMC BIOINFORMATICS
- HelitronScanner uncovers a large overlooked cache of Helitron transposons in many plant genomes
- (2014) W. Xiong et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome
- (2014) B. Chalhoub et al. SCIENCE
- The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes
- (2014) Shengyi Liu et al. Nature Communications
- Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea
- (2014) Isobel AP Parkin et al. GENOME BIOLOGY
- Using GBrowse 2.0 to visualize and share next-generation sequence data
- (2013) L. D. Stein BRIEFINGS IN BIOINFORMATICS
- Unipro UGENE: a unified bioinformatics toolkit
- (2012) Konstantin Okonechnikov et al. BIOINFORMATICS
- A Large Insertion in bHLH Transcription Factor BrTT8 Resulting in Yellow Seed Coat in Brassica rapa
- (2012) Xia Li et al. PLoS One
- Genomes of extremophile crucifers: new platforms for comparative genomics and beyond
- (2012) Simon M Dittami et al. GENOME BIOLOGY
- The predominantly selfing plant Arabidopsis thaliana experienced a recent reduction in transposable element abundance compared to its outcrossing relative Arabidopsis lyrata
- (2012) Nicole de la Chaux et al. Mobile DNA
- Multiple reference genomes and transcriptomes for Arabidopsis thaliana
- (2011) Xiangchao Gan et al. NATURE
- Integrative genomics viewer
- (2011) James T Robinson et al. NATURE BIOTECHNOLOGY
- The genome of the mesopolyploid crop species Brassica rapa
- (2011) Xiaowu Wang et al. NATURE GENETICS
- The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
- (2011) Tina T Hu et al. NATURE GENETICS
- TreeGraph 2: Combining and visualizing evidence from different phylogenetic analyses
- (2010) Ben C Stöver et al. BMC BIOINFORMATICS
- Excision of Helitron Transposons in Maize
- (2009) Y. Li et al. GENETICS
- JBrowse: A next-generation genome browser
- (2009) M. E. Skinner et al. GENOME RESEARCH
- Structure-based discovery and description of plant and animal Helitrons
- (2009) L. Yang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Distribution, diversity, evolution, and survival of Helitrons in the maize genome
- (2009) L. Yang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The B73 Maize Genome: Complexity, Diversity, and Dynamics
- (2009) P. S. Schnable et al. SCIENCE
- Computational prediction and molecular confirmation of Helitron transposons in the maize genome
- (2008) Chunguang Du et al. BMC GENOMICS
- Photoexcited CRY2 Interacts with CIB1 to Regulate Transcription and Floral Initiation in Arabidopsis
- (2008) H. Liu et al. SCIENCE
- Demographic History of European Populations of Arabidopsis thaliana
- (2008) Olivier François et al. PLoS Genetics
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