pwrEWAS: a user-friendly tool for comprehensive power estimation for epigenome wide association studies (EWAS)

Maternal E-Cigarette Exposure in Mice Alters DNA Methylation and Lung Cytokine Expression in Offspring

(2018) Hui Chen et al.   AMERICAN JOURNAL OF RESPIRATORY CELL AND MOLECULAR BIOLOGY

Environmental Influences on the Epigenome: Exposure- Associated DNA Methylation in Human Populations

(2018) Elizabeth M. Martin et al.   Annual Review of Public Health

Maternal E-Cigarette Exposure Results in Cognitive and Epigenetic Alterations in Offspring in a Mouse Model

(2018) Tara Nguyen et al.   CHEMICAL RESEARCH IN TOXICOLOGY

DNA methylation as a mediator of HLA-DRB1*15:01 and a protective variant in multiple sclerosis

(2018) Lara Kular et al.   Nature Communications

GLI2 promoter hypermethylation in saliva of children with a respiratory allergy

(2018) Sabine A. S. Langie et al.   Clinical Epigenetics

The signature of liver cancer in immune cells DNA methylation

(2018) Yonghong Zhang et al.   Clinical Epigenetics

DNA methylation-based age prediction from saliva: High age predictability by combination of 7 CpG markers

(2017) Sae Rom Hong et al.   Forensic Science International-Genetics

Statistical and integrative system-level analysis of DNA methylation data

(2017) Andrew E. Teschendorff et al.   NATURE REVIEWS GENETICS

The correlation of methylation levels measured using Illumina 450K and EPIC BeadChips in blood samples

(2017) Mark W Logue et al.   Epigenomics

Power Analysis and Sample Size Determination in Metabolic Phenotyping

(2016) Benjamin J. Blaise et al.   ANALYTICAL CHEMISTRY

SurvivalGWAS_Power: a user friendly tool for power calculations in pharmacogenetic studies with “time to event” outcomes

(2016) Hamzah Syed et al.   BMC BIOINFORMATICS

Epigenetic Signatures of Cigarette SmokingCLINICAL PERSPECTIVE

(2016) Roby Joehanes et al.   Circulation-Cardiovascular Genetics

Longitudinal study of DNA methylation during the first 5 years of life

(2016) Rocio G. Urdinguio et al.   Journal of Translational Medicine

Tobacco smoking-associated genome-wide DNA methylation changes in the EPIC study

(2016) Srikant Ambatipudi et al.   Epigenomics

Epigenetic Signatures of Cigarette SmokingCLINICAL PERSPECTIVE

(2016) Roby Joehanes et al.   Circulation-Cardiovascular Genetics

Maternal Age at Delivery Is Associated with an Epigenetic Signature in Both Newborns and Adults

(2016) Christina A. Markunas et al.   PLoS One

An evaluation of statistical methods for DNA methylation microarray data analysis

(2015) Dongmei Li et al.   BMC BIOINFORMATICS

Power and sample size estimation for epigenome-wide association scans to detect differential DNA methylation

(2015) Pei-Chien Tsai et al.   INTERNATIONAL JOURNAL OF EPIDEMIOLOGY

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Increased epigenetic alterations at the promoters of transcriptional regulators following inadequate maternal gestational weight gain

(2015) Tomoko Kawai et al.   Scientific Reports

Predicting genome-wide DNA methylation using methylation marks, genomic position, and DNA regulatory elements

(2015) Weiwei Zhang et al.   GENOME BIOLOGY

PROPER: comprehensive power evaluation for differential expression using RNA-seq

(2014) Hao Wu et al.   BIOINFORMATICS

Obesity accelerates epigenetic aging of human liver

(2014) S. Horvath et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Power analysis and sample size estimation for RNA-Seq differential expression

(2014) Travers Ching et al.   RNA

Statistical challenges of high-dimensional methylation data

(2014) Maral Saadati et al.   STATISTICS IN MEDICINE

DNA methylation profiling can classify HIV-associated lymphomas

(2013) Akihiro Matsunaga et al.   AIDS

Review of processing and analysis methods for DNA methylation array data

(2013) C S Wilhelm-Benartzi et al.   BRITISH JOURNAL OF CANCER

Epigenome-wide association data implicate DNA methylation as an intermediary of genetic risk in rheumatoid arthritis

(2013) Yun Liu et al.   NATURE BIOTECHNOLOGY

Recommendations for the design and analysis of epigenome-wide association studies

(2013) Karin B Michels et al.   NATURE METHODS

Tobacco Smoking Leads to Extensive Genome-Wide Changes in DNA Methylation

(2013) Sonja Zeilinger et al.   PLoS One

CpGassoc: an R function for analysis of DNA methylation microarray data

(2012) Richard T. Barfield et al.   BIOINFORMATICS

Epigenetic variability in cells of normal cytology is associated with the risk of future morphological transformation

(2012) Andrew E Teschendorff et al.   Genome Medicine

GWAPower: a statistical power calculation software for genome-wide association studies with quantitative traits

(2011) Sheng Feng et al.   BMC GENETICS

Method to detect differentially methylated loci with case-control designs using Illumina arrays

(2011) Shuang Wang   GENETIC EPIDEMIOLOGY

Statistical approaches for the analysis of DNA methylation microarray data

(2011) Kimberly D. Siegmund   HUMAN GENETICS

Increased methylation variation in epigenetic domains across cancer types

(2011) Kasper Daniel Hansen et al.   NATURE GENETICS

Epigenome-wide association studies for common human diseases

(2011) Vardhman K. Rakyan et al.   NATURE REVIEWS GENETICS

Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis

(2010) Pan Du et al.   BMC BIOINFORMATICS

Targeting DNA methylation for epigenetic therapy

(2010) Xiaojing Yang et al.   TRENDS IN PHARMACOLOGICAL SCIENCES

Genome-wide DNA methylation profiling using Infinium®assay

(2009) Marina Bibikova et al.   Epigenomics