Statistical approaches for the analysis of DNA methylation microarray data
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Title
Statistical approaches for the analysis of DNA methylation microarray data
Authors
Keywords
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Journal
HUMAN GENETICS
Volume 129, Issue 6, Pages 585-595
Publisher
Springer Nature
Online
2011-04-25
DOI
10.1007/s00439-011-0993-x
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Note: Only part of the references are listed.- DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines
- (2011) Jordana T Bell et al. GENOME BIOLOGY
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- (2010) Dandan Zhang et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Repitools: an R package for the analysis of enrichment-based epigenomic data
- (2010) A. L. Statham et al. BIOINFORMATICS
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- (2010) Devin C. Koestler et al. BIOINFORMATICS
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- (2010) Pei Fen Kuan et al. BIOINFORMATICS
- Prediction of epigenetically regulated genes in breast cancer cell lines
- (2010) Leandro A Loss et al. BMC BIOINFORMATICS
- Pash 3.0: A versatile software package for read mapping and integrative analysis of genomic and epigenomic variation using massively parallel DNA sequencing
- (2010) Cristian Coarfa et al. BMC BIOINFORMATICS
- Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis
- (2010) Pan Du et al. BMC BIOINFORMATICS
- An empirical Bayes model for gene expression and methylation profiles in antiestrogen resistant breast cancer
- (2010) Jaesik Jeong et al. BMC Medical Genomics
- Identification of a CpG Island Methylator Phenotype that Defines a Distinct Subgroup of Glioma
- (2010) Houtan Noushmehr et al. CANCER CELL
- Unique DNA Methylation Patterns Distinguish Noninvasive and Invasive Urothelial Cancers and Establish an Epigenetic Field Defect in Premalignant Tissue
- (2010) E. M. Wolff et al. CANCER RESEARCH
- Computational analysis of genome-wide DNA methylation during the differentiation of human embryonic stem cells along the endodermal lineage
- (2010) L. Chavez et al. GENOME RESEARCH
- Evaluation of affinity-based genome-wide DNA methylation data: Effects of CpG density, amplification bias, and copy number variation
- (2010) M. D. Robinson et al. GENOME RESEARCH
- Allele-specific DNA methylation: beyond imprinting
- (2010) B. Tycko HUMAN MOLECULAR GENETICS
- Reconstructing Histories of Complex Gene Clusters on a Phylogeny
- (2010) Tomáš Vinař et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Comprehensive methylome map of lineage commitment from haematopoietic progenitors
- (2010) Hong Ji et al. NATURE
- Epigenetic modifications as therapeutic targets
- (2010) Theresa K Kelly et al. NATURE BIOTECHNOLOGY
- Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications
- (2010) R Alan Harris et al. NATURE BIOTECHNOLOGY
- Quantitative comparison of genome-wide DNA methylation mapping technologies
- (2010) Christoph Bock et al. NATURE BIOTECHNOLOGY
- Epigenetic modifications and human disease
- (2010) Anna Portela et al. NATURE BIOTECHNOLOGY
- Tackling the widespread and critical impact of batch effects in high-throughput data
- (2010) Jeffrey T. Leek et al. NATURE REVIEWS GENETICS
- Principles and challenges of genome-wide DNA methylation analysis
- (2010) Peter W. Laird NATURE REVIEWS GENETICS
- Optimizing the noise versus bias trade-off for Illumina whole genome expression BeadChips
- (2010) Wei Shi et al. NUCLEIC ACIDS RESEARCH
- The DNA Methylome of Human Peripheral Blood Mononuclear Cells
- (2010) Yingrui Li et al. PLOS BIOLOGY
- Statistical methods of background correction for Illumina BeadArray data
- (2009) Yang Xie et al. BIOINFORMATICS
- Integrative clustering of multiple genomic data types using a joint latent variable model with application to breast and lung cancer subtype analysis
- (2009) Ronglai Shen et al. BIOINFORMATICS
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- Identifying differentially methylated genes using mixed effect and generalized least square models
- (2009) Shuying Sun et al. BMC BIOINFORMATICS
- Epigenetic profiling reveals etiologically distinct patterns of DNA methylation in head and neck squamous cell carcinoma
- (2009) Carmen J. Marsit et al. CARCINOGENESIS
- Circos: An information aesthetic for comparative genomics
- (2009) M. Krzywinski et al. GENOME RESEARCH
- Human DNA methylomes at base resolution show widespread epigenomic differences
- (2009) Ryan Lister et al. NATURE
- High-resolution genome-wide cytosine methylation profiling with simultaneous copy number analysis and optimization for limited cell numbers
- (2009) Mayumi Oda et al. NUCLEIC ACIDS RESEARCH
- An Epigenetic Signature in Peripheral Blood Predicts Active Ovarian Cancer
- (2009) Andrew E. Teschendorff et al. PLoS One
- Considerations for the processing and analysis of GoldenGate-based two-colour Illumina platforms
- (2009) AG Lynch et al. STATISTICAL METHODS IN MEDICAL RESEARCH
- An analytical pipeline for genomic representations used for cytosine methylation studies
- (2008) Reid F. Thompson et al. BIOINFORMATICS
- lumi: a pipeline for processing Illumina microarray
- (2008) P. Du et al. BIOINFORMATICS
- Microarray background correction: maximum likelihood estimation for the normal-exponential convolution
- (2008) J. D. Silver et al. BIOSTATISTICS
- Probe signal correction for differential methylation hybridization experiments
- (2008) Dustin P Potter et al. BMC BIOINFORMATICS
- Statistical issues in the analysis of Illumina data
- (2008) Mark J Dunning et al. BMC BIOINFORMATICS
- Model-based clustering of DNA methylation array data: a recursive-partitioning algorithm for high-dimensional data arising as a mixture of beta distributions
- (2008) E Andres Houseman et al. BMC BIOINFORMATICS
- A robust unified approach to analyzing methylation and gene expression data
- (2008) Abbas Khalili et al. COMPUTATIONAL STATISTICS & DATA ANALYSIS
- MEDME: An experimental and analytical methodology for the estimation of DNA methylation levels based on microarray derived MeDIP-enrichment
- (2008) M. Pelizzola et al. GENOME RESEARCH
- Comprehensive high-throughput arrays for relative methylation (CHARM)
- (2008) R. A. Irizarry et al. GENOME RESEARCH
- Moving AHEAD with an international human epigenome project
- (2008) et al. NATURE
- A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis
- (2008) Thomas A Down et al. NATURE BIOTECHNOLOGY
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