Increasing the efficiency and accuracy of the ABACUS protein sequence design method

TetraBASE: A Side Chain-Independent Statistical Energy for Designing Realistically Packed Protein Backbones

(2018) Huanyu Chu et al.   Journal of Chemical Information and Modeling

SPIN2: Predicting sequence profiles from protein structures using deep neural networks

(2018) James O'Connell et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Computational Protein Design with Deep Learning Neural Networks

(2018) Jingxue Wang et al.   Scientific Reports

The Rosetta All-Atom Energy Function for Macromolecular Modeling and Design

(2017) Rebecca F. Alford et al.   Journal of Chemical Theory and Computation

Sequence statistics of tertiary structural motifs reflect protein stability

(2017) Fan Zheng et al.   PLoS One

Data driven flexible backbone protein design

(2017) Mark G. F. Sun et al.   PLoS Computational Biology

Computational protein design for given backbone: recent progresses in general method-related aspects

(2016) Haiyan Liu et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

An Atomistic Statistically Effective Energy Function for Computational Protein Design

(2016) Christopher M. Topham et al.   Journal of Chemical Theory and Computation

Proteins of well-defined structures can be designed without backbone readjustment by a statistical model

(2016) Xiaoqun Zhou et al.   JOURNAL OF STRUCTURAL BIOLOGY

The coming of age of de novo protein design

(2016) Po-Ssu Huang et al.   NATURE

Prediction of Stable Globular Proteins Using Negative Design with Non-native Backbone Ensembles

(2015) James A. Davey et al.   STRUCTURE

Protein design with a comprehensive statistical energy function and boosted by experimental selection for foldability

(2014) Peng Xiong et al.   Nature Communications

Computational protein design: The proteus software and selected applications

(2013) Thomas Simonson et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Improving the accuracy of protein stability predictions with multistate design using a variety of backbone ensembles

(2013) James A. Davey et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Macromolecular NMR spectroscopy for the non-spectroscopist

(2011) Ann H. Kwan et al.   FEBS Journal

Improved prediction of protein side-chain conformations with SCWRL4

(2009) Georgii G. Krivov et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS