Protein design with a comprehensive statistical energy function and boosted by experimental selection for foldability

Energy Functions in De Novo Protein Design: Current Challenges and Future Prospects

(2013) Zhixiu Li et al.   Annual Review of Biophysics

Strategies to control the binding mode of de novo designed protein interactions

(2013) Bryan S Der et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Computational de Novo Design and Characterization of a Protein That Selectively Binds a Highly Hyperpolarizable Abiological Chromophore

(2013) H. Christopher Fry et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Octarellin VI: Using Rosetta to Design a Putative Artificial (β/α)8 Protein

(2013) Maximiliano Figueroa et al.   PLoS One

Protein folding and de novo protein design for biotechnological applications

(2013) George A. Khoury et al.   TRENDS IN BIOTECHNOLOGY

An Evolution-Based Approach to De Novo Protein Design and Case Study on Mycobacterium tuberculosis

(2013) Pralay Mitra et al.   PLoS Computational Biology

Predictive Bcl-2 Family Binding Models Rooted in Experiment or Structure

(2012) Joe DeBartolo et al.   JOURNAL OF MOLECULAR BIOLOGY

Principles for designing ideal protein structures

(2012) Nobuyasu Koga et al.   NATURE

Alteration of the oxygen-dependent reactivity of de novo Due Ferri proteins

(2012) Amanda J. Reig et al.   Nature Chemistry

Theoretical and Computational Protein Design

(2011) Ilan Samish et al.   Annual Review of Physical Chemistry

Computational Design of Proteins Targeting the Conserved Stem Region of Influenza Hemagglutinin

(2011) S. J. Fleishman et al.   SCIENCE

Computational Design of an Enzyme Catalyst for a Stereoselective Bimolecular Diels-Alder Reaction

(2010) J. B. Siegel et al.   SCIENCE

De Novo Design of a βαβ Motif

(2009) Huanhuan Liang et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

PINE-SPARKY: graphical interface for evaluating automated probabilistic peak assignments in protein NMR spectroscopy

(2009) W. Lee et al.   BIOINFORMATICS

A Second Look at Mini-Protein Stability: Analysis of FSD-1 Using Circular Dichroism, Differential Scanning Calorimetry, and Simulations

(2009) Jianwen A. Feng et al.   BIOPHYSICAL JOURNAL

Optimizing Protein Stability In Vivo

(2009) Linda Foit et al.   MOLECULAR CELL

Structure prediction for CASP8 with all-atom refinement using Rosetta

(2009) Srivatsan Raman et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction

(2002) Hongyi Zhou et al.   PROTEIN SCIENCE